HMM length of domain: 66 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	46.8	0.0	4.4e-16	1.9e-12	2	65	75	137
2	7.8	0.0	0.00065	2.7	26	58	178	210
3	52.9	0.4	5.6e-18	2.3e-14	2	65	228	287
4	2.7	0.0	0.026	1.1e+02	40	64	353	379
5	33.4	0.1	6.8e-12	2.9e-08	2	53	394	442
6	2.7	0.0	0.026	1.1e+02	43	64	531	554
7	42.3	0.1	1.1e-14	4.7e-11	1	57	574	629
8	-2.0	0.0	0.75	3.2e+03	40	52	698	710
9	35.9	0.0	1.1e-12	4.7e-09	5	65	729	789

  Alignments for each domain:
  == domain 1  score: 46.8 bits;  conditional E-value: 4.4e-16
                    EEEEEEEETTTTEEEEEETTSS-EEEEETTTS-STT.TS--STSEEEEEEEE..CSSCEEEEEEEE CS
            CSD   2 tGtVkwfnakkgfGFItredgdkdvFvHvsaiqgdgfrsLqegqeVeFevve..gkkgpeAanVtk 65 
                    tG+++++    ++GFI++ ++++++F+H+s+++g+  + L+ g+ VeFe++   ++++p A+ Vtk
  KWMTBOMO00203  75 TGIIEKLLH--SYGFIQCCERQARLFFHFSQFSGNT-EHLKIGDPVEFEMTYdrRTGKPIASTVTK 137
                    799999999..*************************.*************9889**********98 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.00065
                    EEEETTTS-STT.TS--STSEEEEEEEECSSCE CS
            CSD  26 vFvHvsaiqgdgfrsLqegqeVeFevvegkkgp 58 
                     F+ +++   +g  +L +g++V+F++  +++g+
  KWMTBOMO00203 178 FFLPYTKDDVEGNVTLRTGDAVSFQIATNQRGT 210
                    555555555556679*************99985 PP

  == domain 3  score: 52.9 bits;  conditional E-value: 5.6e-18
                    EEEEEEEETTTTEEEEEETTSS-EEEEETTTS-STT.TS--STSEEEEEEEECSSCEEEEEEEE CS
            CSD   2 tGtVkwfnakkgfGFItredgdkdvFvHvsaiqgdgfrsLqegqeVeFevvegkkgpeAanVtk 65 
                     G+V+ +++  +fGFI+r+d  k++F+H+s+ + ++  +L+ g++VeF ++ +++++ A+n+tk
  KWMTBOMO00203 228 HGVVCSMKE--NFGFIERADVVKEIFFHFSETKCKE--ELTLGDDVEFIIQTRNGKEVACNITK 287
                    599999999..*********************9999..************************97 PP

  == domain 4  score: 2.7 bits;  conditional E-value: 0.026
                    S--STSEEEEEEEE..CSSCEEEEEEE CS
            CSD  40 sLqegqeVeFevve..gkkgpeAanVt 64 
                    +L  g+ V+F+v    +++ ++A+n++
  KWMTBOMO00203 353 TLRHGDWVQFQVATdrRDQLKRATNIS 379
                    899*********987777778888886 PP

  == domain 5  score: 33.4 bits;  conditional E-value: 6.8e-12
                    EEEEEEEETTTTEEEEEETTSS-EEEEETTTS-STT.TS--STSEEEEEEEE CS
            CSD   2 tGtVkwfnakkgfGFItredgdkdvFvHvsaiqgdgfrsLqegqeVeFevve 53 
                    +G V+ + +  gfGFI + ++++  F+H+ ++ + g ++L+ g+eVeF+v +
  KWMTBOMO00203 394 QGLVCSLRE--GFGFIRCVEREQTMFFHFAEVLRLG-QDLTVGDEVEFTVDH 442
                    899999999..*************************.***********9976 PP

  == domain 6  score: 2.7 bits;  conditional E-value: 0.026
                    STSEEEEEEEE..CSSCEEEEEEE CS
            CSD  43 egqeVeFevve..gkkgpeAanVt 64 
                     g++V+F++ +  ++k   A +V+
  KWMTBOMO00203 531 VGDKVTFDLYQvkRTKELVAMSVQ 554
                    69*******998899999999997 PP

  == domain 7  score: 42.3 bits;  conditional E-value: 1.1e-14
                    EEEEEEEEETTTTEEEEEETTSS-EEEEETTTS-STT.TS--STSEEEEEEEE..CSSC CS
            CSD   1 ltGtVkwfnakkgfGFItredgdkdvFvHvsaiqgdgfrsLqegqeVeFevve..gkkg 57 
                    ++G +  +++  gfGFI+++d+ k+vF+H+s+++g+  ++L+ g eVe+++ +  g++g
  KWMTBOMO00203 574 MQGFIAALKD--GFGFIETSDHTKEVFFHFSNLEGSP-ENLELGIEVEYSLGRlnGSGG 629
                    6899999999..*************************.************988764444 PP

  == domain 8  score: -2.0 bits;  conditional E-value: 0.75
                    S--STSEEEEEEE CS
            CSD  40 sLqegqeVeFevv 52 
                     Lq g+ V+F+  
  KWMTBOMO00203 698 ILQVGDPVTFQAD 710
                    599*******875 PP

  == domain 9  score: 35.9 bits;  conditional E-value: 1.1e-12
                    EEEEETTTTEEEEEETTSS-.EEEEETTTS-STT.TS--STSEEEEEEEE..CSSCEEEEEEEE CS
            CSD   5 VkwfnakkgfGFItredgdk.dvFvHvsaiqgdgfrsLqegqeVeFevve..gkkgpeAanVtk 65 
                    V  ++    fGF + + +d+ ++F+H+s+++g+   +Lq g+ VeF +    ++++ +A+nV+k
  KWMTBOMO00203 729 VDAIKG--VFGFLSVDGEDTrRLFFHMSEVRGNP-SELQSGDTVEFVMLTnpRNGKSSACNVVK 789
                    555555..7****999988879************.***********9988799*********97 PP