Gene

KWMTBOMO05383

Pre Gene Modal

BGIBMGA002551

Annotation

PREDICTED:_zinc_finger_protein_1_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr9(+):16533574-16537465      View in EpiBrowser

Transcription factor

zf-C2H2

Location in the cell

Nuclear   Reliability : 4.889

CDS

ATGAATATCGTTCGTCCGCTGGCGAGCGGAGGGTCGGAAGGCAAGCCGTCCGAAGAAGAAGAGGACCGCGGGGGCTCCCCGCTGGGCCCCGGAGGACCGTTTACCTGCAGCCAGTGTCGAGGCACCTATCCCACGCGCGAGCAACTGGACCGACACGAGACCTTGCACACGCCCAGCACACAGACATGCAAGATCTGTCATAAGAGCTTCGCGAATGTGTACCGACTGCAGCGGCACATGATCAGCCACAACGAGAGCGCCGACCTGAGGAAGTACAAGTGCAACGATTGCGACAAAGCCTTCAAGTTCAAACACCACCTCAAAGAGCATCACAGGATACATAGCGGAGAGAAACCATTCGAATGCGCTAATTGTGGGAAGAAATTTTCACATTCTGGTTCATATTCGAGTCATATGACCTCCAAGAAGTGCCTAGTCATGAACCTTAAAATGGGCCGAATAAAACCGAACAACCCTGCCCTCAACCCCAACAGAAGTCCGTCTAGGAAGCGAGCGAACGCAATAGCAACATCTCAATTGAACAACAACATACCCTCAAACGGAAACACTTTCCTTCCTATCCTTCCAAAATACAACGAAGCTGCTGCCTTTTTCGCTTCCATGTCGTCACAAGATAGTAATTTCCACCGCCCGCCTTTAGGGCAGCCAGCTCTTAATCCATTCTATCTGCCCCCGGGGCTACCAATGAGTCCTGCGAGTGGTATCACTCCATATAGCTTAAGCCAATTCTTTGAACAATTAGCTTCATCTCAGTGTCCGCCAAGGAAAATAGAGAAACTACCCAGCCCGAAACACTATAATCCCGAGGCTCCCGAAGATCTAATCGAAGAAGTCACCGAGGAAGAAGACAAGAGATCAGAAGGGAGCGCTGAACTGGTCATGGATATTGAGGATGATGAGGCAGTTACGGTTAAAAAGGAGAAACAAGATCAAGACTGTGAATCAAGGCCTCCATCTCAATATAATTCCGTCCCAATAATGAACAGCAATGTTCAAGATGAAGACAATAATCAATCCAGATTCAACACCATATTAGAATCAGTTAGTGCATCTGTAACCAAACATTTCATCAGTACTAATGCAGACAAGCTGTCCCCGGTCGCCGGCTCCGTGTGTCCTAGCTTGGAATCGCCTCCGACGCCGCATGTCATCATAAAGGAAGAACCGGAGGACTTAAACCGATGCTTTAAATGTAACATCACTTTCGAAAGTAGGGACGAGTTGTTAGACCACGAAAAGATACACTGCGATAATATATTTAGAAAGCATGAGAGCTTAGCGGCGCAAGTCGCGGAAACGGTGGCGCTCACCAGGATAGAAGCTGAGATGAGGAACAACTTGCAGAGCGGCGCGAGTGCGAGCGAAGACGAAGACTCCAAGAACGATGATAAACTTTCTATTCACGACAACGACAAGAAAATCAGAGTCCGCACCGCACTAACTGATGTCCAGCAAGTCAAACTGAGGGCATTTTACTGCTTCGACCAGAGACCGAACCGGGAGGAATCCAAGCGCATAGCTCAGCAAGTCGGATTGGACAGTCGAGTGGTGCAAGTGTGGTTCCAAAACTTTAGGGCCAGGCAGCGAAGAATGACGAAAACACAGCTCTCGCCCGACCAACCGCTAGACTTGTCCACGAAGAAATCGAACCAATCGGTGACCTCCACGCCGTCGCCGTCGCCTTGCAGCATTTCAGTTACACATTCCGACTCCGAGGAAGCTGTGAACTTAAGTCAAAAGTCGTCACGTAGCACAACGCCTCATCGCACCAATTACACCAACACTTACTCACATTCCAACTGCTCATCATCTTCTTTCACTGACTTTAGACTGTCGCCATCGCCCGGTGAGATCAACGGTCAGAAACGTTTGCTGCCCCAGAAACTCAATCCCTTAGTACCCATGGAGAAGTTGCTGCAGTACAACGACATGGCCAATGGGAGATCTCCTATCCTGAACATGCATATGTCGAGTGACGTGACCAGGCACGGCAGCCCGTCCTACGACCGTCCCTGGGCTGATGACGTCCAACCTTCGATCGAATACGACGATGAACCGACTGTACTTAAGAAGGGCAAGCTCAAGCACGTCGACGTCAAGGAAGGAGAAGGACAATTTGTGTGTGACCAGTGCGACAAGACCTTTGTGAAACAGAGCTCTCTAGCCAGACACAAGTACGAACATTCAGGGCAGCGACCTCACAAGTGTCAGGAGTGCCCGAAAGCGTTCAAACACAAACACCACCTCACGGAACATAAGAGACTCCATACCGGGGAAAAGCCCTTCCAGTGCTGTAAATGCTTCAAGAAATTCTCCCATTCGGGTTCGTACAGCCAACACATGAATCACCGGTTCGCCATTTGCAAGCCTTACAGAGAGTAG

Protein

MNIVRPLASGGSEGKPSEEEEDRGGSPLGPGGPFTCSQCRGTYPTREQLDRHETLHTPSTQTCKICHKSFANVYRLQRHMISHNESADLRKYKCNDCDKAFKFKHHLKEHHRIHSGEKPFECANCGKKFSHSGSYSSHMTSKKCLVMNLKMGRIKPNNPALNPNRSPSRKRANAIATSQLNNNIPSNGNTFLPILPKYNEAAAFFASMSSQDSNFHRPPLGQPALNPFYLPPGLPMSPASGITPYSLSQFFEQLASSQCPPRKIEKLPSPKHYNPEAPEDLIEEVTEEEDKRSEGSAELVMDIEDDEAVTVKKEKQDQDCESRPPSQYNSVPIMNSNVQDEDNNQSRFNTILESVSASVTKHFISTNADKLSPVAGSVCPSLESPPTPHVIIKEEPEDLNRCFKCNITFESRDELLDHEKIHCDNIFRKHESLAAQVAETVALTRIEAEMRNNLQSGASASEDEDSKNDDKLSIHDNDKKIRVRTALTDVQQVKLRAFYCFDQRPNREESKRIAQQVGLDSRVVQVWFQNFRARQRRMTKTQLSPDQPLDLSTKKSNQSVTSTPSPSPCSISVTHSDSEEAVNLSQKSSRSTTPHRTNYTNTYSHSNCSSSSFTDFRLSPSPGEINGQKRLLPQKLNPLVPMEKLLQYNDMANGRSPILNMHMSSDVTRHGSPSYDRPWADDVQPSIEYDDEPTVLKKGKLKHVDVKEGEGQFVCDQCDKTFVKQSSLARHKYEHSGQRPHKCQECPKAFKHKHHLTEHKRLHTGEKPFQCCKCFKKFSHSGSYSQHMNHRFAICKPYRE

Uniprot

H9IZ66   A0A2A4K837   A0A0L7LQ71   A0A2H1X1Z0   A0A212EWE1   A0A0N1IG97   + More
A0A1E1W8V4   A0A0T6BB70   A0A1W4X879   A0A1W4WXD4   A0A1W4X6T3   A0A1W4X815   A0A1W4X6S7   A0A1Y1MLD0   A0A1B6D7U6   A0A1B6IVM6   A0A1W4WXG0   E0V9Q0   A0A224XFP1   A0A146LXQ7   A0A336LYG8   A0A0A9YSR9   D6X479   A0A139WAA0   A0A2P8ZK99   A0A1W4U6Y1   A0A1B6F025   A0A1B6M4D5   B3P541   B4PML5   A0A1B6C531   A0A1W4UJS1   N6UM51   A0A0R1ECT6   A0A0R1E688   A0A1B0C9V8   A0A0A9XJ68   A0A1B6E2L6   A0A2J7RTH7   A0A1B0FRC8   A0A0L0CFR9   A0A1A9W6L3  

Pubmed

19121390    26227816    22118469    26354079    28004739    20566863    + More
26823975    25401762    18362917    19820115    29403074    17994087    17550304    23537049    26108605   

EMBL

BABH01011260    NWSH01000037    PCG80391.1    JTDY01000359    KOB77554.1    ODYU01012839    + More
SOQ59341.1    AGBW02012018    OWR45796.1    KQ460036    KPJ18441.1    GDQN01007651    JAT83403.1    LJIG01002397    KRT84543.1    GEZM01029878    JAV85888.1    GEDC01015547    JAS21751.1    GECU01016712    JAS90994.1    DS234995    EEB10085.1    GFTR01007808    JAW08618.1    GDHC01006854    JAQ11775.1    UFQT01000302    SSX23022.1    GBHO01007517    JAG36087.1    KQ971410    EEZ97305.2    KYB24845.1    PYGN01000031    PSN56925.1    GECZ01026211    JAS43558.1    GEBQ01009213    JAT30764.1    CH954182    EDV53024.1    CM000160    EDW99149.2    GEDC01028794    JAS08504.1    APGK01009502    APGK01009503    APGK01009504    KB737956    ENN82820.1    KRK04695.1    KRK04696.1    AJWK01002906    GBHO01023928    JAG19676.1    GEDC01005149    JAS32149.1    NEVH01000003    PNF44129.1    CCAG010008017    CCAG010008018    JRES01000454    KNC31052.1   

Proteomes

UP000005204    UP000218220    UP000037510    UP000007151    UP000053240    UP000192223    + More
UP000009046    UP000007266    UP000245037    UP000192221    UP000008711    UP000002282    UP000019118    UP000092461    UP000235965    UP000092444    UP000037069    UP000091820   

PRIDE

H9IZ66   

Pfam

PF00096   zf-C2H2        + More
PF00046   Homeodomain

Interpro

IPR013087   Znf_C2H2_type        + More
IPR017970   Homeobox_CS       
IPR001356   Homeobox_dom       
IPR036236   Znf_C2H2_sf       
IPR009057   Homeobox-like_sf       

SUPFAM

SSF46689   SSF46689        + More
SSF57667   SSF57667       

CDD

cd00086  homeodomain

ProteinModelPortal

H9IZ66   A0A2A4K837   A0A0L7LQ71   A0A2H1X1Z0   A0A212EWE1   A0A0N1IG97   + More
A0A1E1W8V4   A0A0T6BB70   A0A1W4X879   A0A1W4WXD4   A0A1W4X6T3   A0A1W4X815   A0A1W4X6S7   A0A1Y1MLD0   A0A1B6D7U6   A0A1B6IVM6   A0A1W4WXG0   E0V9Q0   A0A224XFP1   A0A146LXQ7   A0A336LYG8   A0A0A9YSR9   D6X479   A0A139WAA0   A0A2P8ZK99   A0A1W4U6Y1   A0A1B6F025   A0A1B6M4D5   B3P541   B4PML5   A0A1B6C531   A0A1W4UJS1   N6UM51   A0A0R1ECT6   A0A0R1E688   A0A1B0C9V8   A0A0A9XJ68   A0A1B6E2L6   A0A2J7RTH7   A0A1B0FRC8   A0A0L0CFR9   A0A1A9W6L3  

PDB

5V3M     E-value=1.33415e-11,     Score=171

KEGG

101742904    K09299 zinc finger homeobox protein 1/2 | (RefSeq) zinc finger protein 1

GO

GO:0006355   GO:0043565   GO:0005634   GO:0003677   GO:0046872   GO:0003676   GO:0008270   GO:0006511   GO:0005525   GO:0016491   GO:0003824  

Subcellular location

Nucleus  

Length:

800

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00021

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00004

outside

1  -  800

 

 

Pi

182.876437

Theta

195.795655

Tajima's D

0.064796

CLR

0.435878

CSRT

0.386430678466077

Interpretation

Uncertain