HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	10.3	0.0	0.012	0.74	2	23	475	497
2	15.4	0.9	0.0003	0.018	1	23	508	531
3	14.5	2.5	0.00058	0.035	1	23	541	563
4	19.1	2.1	2.1e-05	0.0012	1	23	715	737
5	19.9	0.2	1.1e-05	0.00064	1	23	743	765
6	17.1	3.2	8.6e-05	0.0052	1	23	771	793

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.012
                    EETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirt.H 23 
                    +C++C  sF++  +L+rH    H
  KWMTBOMO05086 475 RCGVCLASFPSAWLLERHAALqH 497
                    7*****************98877 PP

  == domain 2  score: 15.4 bits;  conditional E-value: 0.0003
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    ++C+ Cg+s++ +s +++H+   H
  KWMTBOMO05086 508 FVCEQCGQSYRYRSAYVKHREQnH 531
                    89*****************98777 PP

  == domain 3  score: 14.5 bits;  conditional E-value: 0.00058
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ++C++Cg+ F+   ++k+H+  H
  KWMTBOMO05086 541 FTCDVCGMQFRYLKSFKKHRLNH 563
                    89******************998 PP

  == domain 4  score: 19.1 bits;  conditional E-value: 2.1e-05
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    + Cp Cgk+ ++k+nLk H r+H
  KWMTBOMO05086 715 FACPFCGKCVRSKENLKLHVRKH 737
                    78********************9 PP

  == domain 5  score: 19.9 bits;  conditional E-value: 1.1e-05
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ++C  Cg+ F  ks+L+rH+r+H
  KWMTBOMO05086 743 FVCLFCGRAFGGKSDLTRHLRIH 765
                    89********************9 PP

  == domain 6  score: 17.1 bits;  conditional E-value: 8.6e-05
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y C+ Cgk+F r + L +H+ tH
  KWMTBOMO05086 771 YHCEACGKCFARADYLSKHLTTH 793
                    89*******************99 PP