SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO05086
Pre Gene Modal
BGIBMGA012518
Annotation
PREDICTED:_zinc_finger_protein_629-like_isoform_X1_[Bombyx_mori]
Transcription factor
Location in the cell
Nuclear   Reliability : 4.383
 

Sequence

CDS
ATGGGAAGTGAGCACTATTGCCTAAGGTGGAACAATCATCAGAGCAACCTGCTGGGAGTATTCAGCCAGTTGCTGCACGACGAAAGTTTGGTAGACGTCACACTTGCTTGTGCCGAAGGTGCATCCATCAGAGCGCACAAGGTAGTTCTATCTGCGTGTTCTTCGTACTTCCGTTCGCTGTTCGTGGATCATCCTTCACGTCACCCTATCGTGATTCTAAAAGACGTCGGCTTAGAAGAGCTACGTACTCTCGTCGACTTCATGTACAAAGGCGAGGTCAACGTCCAGTACTGTCAGCTGCCTGCACTCCTCAGAACTGCTGAAAGCCTTCAGGTCAAAGGATTAGCTGAAATGACGACTTTAAACGCAGCCGGTATCGAAACAAGAAGTGTTTCGGAGCAAAGAGAGCAGGGCCAAAGCCAAGACGCTAGAGAAGGCCCAGAAAATCACGAACGTCTTGAAGGCAAAGAGGTTCGTGATAATGACAGACGAGAACCAAAAGATTTACGAGATAGAGATAACAAAGATCTCCGAGATAGTCATTTACGAGACTGTCGAGAATCCCGAGAGCAACGAGAACATAGGGAACAAAGGGAATCTCGCGATCTTAGGGAAATACGGGACTTACGCGAAATGCGCGAGTTAAGGGACTCTCGAGAACACAGAGATCTTAGAGAATCTAGAGATATTCGAGACCCTCGAGATCTTCGAGACGTTAGAGATTCCAGAGAGATAAGAGATGTTCGTGATCAAAGAGATACGACAGAGTCGTCACCATCACGAATATCCCCTTTATTGACTGTACGTCGATTTAGAACAGAAACTTCGACAGAGACACAATCGTTAGTGCACCCGCCGTTGCCTAAAGATGAACCACCTGACGAGCCAATGCCATCTTCATCTCCAGAGGATGATTCAGCATCTTTAAGGTCAAATGGAGCCCAGAATGAAAGTATGGGTATTAATATGACAATAAATAGTCACAATACTGGTGTGCTGAGTACTCGCTATTCTCCAGTTGAGCGAATGAGTGTACTCAATGCTATACCCCATCCTGGACTGCCACATCCCTCTCTTCCATCACTTTCAAGCCCTAGAAGTGAGCCTATTCCGGGACCTTCTGGACTACCTCCAGTTCAACAAGCTCCTTTGTCCTTGAAGAAAGAATTGGTTGATTGGGATAGAAATAATGAAGACAGAGGTGGCGAAACTTCAGCAGACTACAGGCTTCAACATGAACCGGTTTGCCTGGATATGTCGTGTCCGCCTGGTATCCCGAGCCCGTTATCGGCACGCAGTTCTACAGTTCTGCCGCTATGGTCACCGCTGTTTGCGCTCCAAGCATGTCGCCTGCGTCGGTACTTGTCTGACGACTGCATGGGCTACCCCACAACTAGACACTTGATACCATCAGAGCGCCGTAGATGTGGTGTTTGTCTCGCATCATTCCCCTCAGCGTGGTTGCTTGAGAGGCACGCGGCTCTACAGCATGCTTCCCAATCTGCCTGCGACGACAAACCATTCGTGTGCGAACAGTGCGGTCAAAGCTATAGATATCGATCGGCTTACGTCAAGCATCGAGAACAAAACCATCGAGCCAGGCTGCCTGCTGATAAACTTTTTACTTGCGACGTTTGCGGCATGCAATTCAGATATTTAAAATCGTTCAAAAAACATCGTTTGAACCACACGTTAGAGAGACTTCACACCAAAAACACCGATGTCCCTGAAGGAGACGTTTCCAGTACAAACGAAGCTTTGATTGGTAAATGTGGCGAGATGGACCTTTCTATGAAAAAGAAAAATAGAGTCGATGAGATCCGGTCTCCTACCATTGACGTCTTACGAGAAGCTGAACAAGATAGTACCGTCGACTCGAACGATCCTGCCGATTCAATTGTAACAGTAGACGATTCGACTGAATGTCGCAACTCCAGTGCTGAGAGCGAAAGTAGGCGCGATGAGGACACAACTTCGGAGAGCAGAAGACGCATACCCGTTTCCTTTGCCAGCGTCAGTTCGATGGCTGATAGTTCAGAAAATGAGTCACGTACTGACAGCAAAAACGAGAGTTCAAGCTCTCATTCTGCCATCCTCGGGTTTATGCAGAACGATGAAAGACAGAGAGATAGGGAGAGGAGATTCGCTTGTCCATTCTGTGGTAAGTGCGTGCGCTCTAAGGAGAATTTAAAGTTACACGTAAGAAAACACACTGGAGAGCGTCCGTTCGTTTGTCTATTTTGTGGCAGAGCTTTTGGGGGTAAGAGCGATCTAACCCGTCATCTCAGAATCCATACAGGCGAGCGTCCGTATCATTGTGAGGCATGTGGTAAGTGTTTCGCTCGCGCCGATTATCTGTCAAAGCATCTAACTACACACGTACATAACACTCGATGA
Protein
MGSEHYCLRWNNHQSNLLGVFSQLLHDESLVDVTLACAEGASIRAHKVVLSACSSYFRSLFVDHPSRHPIVILKDVGLEELRTLVDFMYKGEVNVQYCQLPALLRTAESLQVKGLAEMTTLNAAGIETRSVSEQREQGQSQDAREGPENHERLEGKEVRDNDRREPKDLRDRDNKDLRDSHLRDCRESREQREHREQRESRDLREIRDLREMRELRDSREHRDLRESRDIRDPRDLRDVRDSREIRDVRDQRDTTESSPSRISPLLTVRRFRTETSTETQSLVHPPLPKDEPPDEPMPSSSPEDDSASLRSNGAQNESMGINMTINSHNTGVLSTRYSPVERMSVLNAIPHPGLPHPSLPSLSSPRSEPIPGPSGLPPVQQAPLSLKKELVDWDRNNEDRGGETSADYRLQHEPVCLDMSCPPGIPSPLSARSSTVLPLWSPLFALQACRLRRYLSDDCMGYPTTRHLIPSERRRCGVCLASFPSAWLLERHAALQHASQSACDDKPFVCEQCGQSYRYRSAYVKHREQNHRARLPADKLFTCDVCGMQFRYLKSFKKHRLNHTLERLHTKNTDVPEGDVSSTNEALIGKCGEMDLSMKKKNRVDEIRSPTIDVLREAEQDSTVDSNDPADSIVTVDDSTECRNSSAESESRRDEDTTSESRRRIPVSFASVSSMADSSENESRTDSKNESSSSHSAILGFMQNDERQRDRERRFACPFCGKCVRSKENLKLHVRKHTGERPFVCLFCGRAFGGKSDLTRHLRIHTGERPYHCEACGKCFARADYLSKHLTTHVHNTR

Summary

Pfam
PF00096   zf-C2H2        + More
PF00651   BTB
Interpro
IPR000210   BTB/POZ_dom        + More
IPR011333   SKP1/BTB/POZ_sf       
IPR036236   Znf_C2H2_sf       
IPR013087   Znf_C2H2_type       
SUPFAM
SSF57667   SSF57667        + More
SSF54695   SSF54695       
PDB
1MEY     E-value=3.46655e-17,     Score=219

Ontologies

Topology

Length:
798
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00124
Exp number, first 60 AAs:
0.00061
Total prob of N-in:
0.00012
outside
1  -  798
 
 

Population Genetic Test Statistics

Pi
200.084626
Theta
186.07024
Tajima's D
0.639975
CLR
0.218681
CSRT
0.55587220638968
Interpretation
Uncertain
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