HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	24.6	0.5	3.6e-07	2.2e-05	1	20	147	166
2	22.6	1.2	1.6e-06	9.3e-05	1	23	175	197
3	22.6	1.8	1.6e-06	9.3e-05	1	23	203	225
4	17.9	2.5	4.9e-05	0.0029	1	23	231	253
5	13.4	5.6	0.0013	0.075	1	23	259	281
6	18.6	3.9	2.9e-05	0.0017	1	23	287	310

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 3.6e-07
                    EEETTTTEEESSHHHHHHHH CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHi 20 
                    + C+dCgk+F+  +nL+rH+
  KWMTBOMO16041 147 FACGDCGKVFNAHYNLTRHM 166
                    78*****************9 PP

  == domain 2  score: 22.6 bits;  conditional E-value: 1.6e-06
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ++C++Cgk F++ s L+rH  +H
  KWMTBOMO16041 175 FVCKICGKGFRQASTLCRHKIIH 197
                    89*****************9988 PP

  == domain 3  score: 22.6 bits;  conditional E-value: 1.6e-06
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    +kC  Cgk F+r+s L++H r+H
  KWMTBOMO16041 203 HKCLTCGKAFNRSSTLNTHARIH 225
                    79*******************99 PP

  == domain 4  score: 17.9 bits;  conditional E-value: 4.9e-05
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ++C+ Cgk F +k n+k+H+ tH
  KWMTBOMO16041 231 FVCEFCGKGFHQKGNYKNHRLTH 253
                    89********************9 PP

  == domain 5  score: 13.4 bits;  conditional E-value: 0.0013
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ykC++C+k F + +nL+ H+ tH
  KWMTBOMO16041 259 YKCSICNKAFHQIYNLTFHMHTH 281
                    9*********************9 PP

  == domain 6  score: 18.6 bits;  conditional E-value: 2.9e-05
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    ++C++C k F+r+ +Lk+H r+ H
  KWMTBOMO16041 287 FTCSICAKGFCRNFDLKKHTRKlH 310
                    89********************99 PP