HMM length of domain: 212 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	27.2	0.0	3.2e-10	2.7e-06	112	208	3	92
2	-2.6	0.1	0.4	3.4e+03	79	96	337	350

  Alignments for each domain:
  == domain 1  score: 27.2 bits;  conditional E-value: 3.2e-10
           Nrf1 112 lelPplvidgiptpvekmtqaqlrlfipemlkystgrgkpgWGkeslkpvwwPkdlpwanvrsdvrseeekkkvsWteaLRkivknCYkyhgReDL 207
                     +lP l  +g p+p+ k+   +l  fi  m+  s g++     k+  +p+wwP++++++      r    +    W   L+++vk+CY+yh    L
  KWMTBOMO04908   3 ANLPLLFANGNPIPLSKIRAGELERFITFMVTCSWGHDT---AKDIRQPPWWPSNVEFTHPFV--R--PAAVPNDWELRLKNVVKKCYEYHKSAFL 91 
                    689*****************************9999987...588899*********986432..2..2334557****************98777 PP

           Nrf1 208 l 208
                    l
  KWMTBOMO04908  92 L 92 
                    6 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.4
           Nrf1  79 eavvknlksvileeleea 96 
                    e+ ++++k++    le++
  KWMTBOMO04908 337 EDYIQQCKNK----LESE 350
                    2222222222....2222 PP