HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	14.0	3.3	0.00083	0.05	1	23	243	265
2	14.5	6.1	0.00059	0.035	1	23	271	293
3	13.3	7.1	0.0013	0.08	1	23	299	321
4	14.9	1.1	0.00042	0.025	1	23	327	349
5	18.2	2.5	3.8e-05	0.0023	1	23	355	377
6	20.0	0.0	1.1e-05	0.00064	1	23	383	405
7	13.9	0.3	0.00088	0.053	1	23	410	432
8	6.4	0.9	0.21	13	5	19	442	456
9	15.4	0.6	0.00031	0.018	3	23	511	531
10	16.8	2.4	0.00011	0.0063	2	23	597	618
11	18.1	3.3	4.2e-05	0.0025	1	23	628	650

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 0.00083
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y C++CgksF  k++L++H r+H
  KWMTBOMO04338 243 YSCDECGKSFLLKHHLTTHARVH 265
                    89*******************99 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 0.00059
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ++C +Cgk F rk+ L++H+  H
  KWMTBOMO04338 271 HVCAHCGKAFARKHCLNTHLLLH 293
                    79******************999 PP

  == domain 3  score: 13.3 bits;  conditional E-value: 0.0013
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y+C++C++ F+ k++L++H r+H
  KWMTBOMO04338 299 YRCHECKMAFTLKHHLVTHSRVH 321
                    9********************99 PP

  == domain 4  score: 14.9 bits;  conditional E-value: 0.00042
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ++C++Cg+ F+ k +L++H + H
  KWMTBOMO04338 327 FVCGECGRGFPLKRHLVTHSKYH 349
                    89*****************9988 PP

  == domain 5  score: 18.2 bits;  conditional E-value: 3.8e-05
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y+C++Cg+sF +k++L+ H r H
  KWMTBOMO04338 355 YVCTECGESFAHKEHLVMHSRFH 377
                    9******************9988 PP

  == domain 6  score: 20.0 bits;  conditional E-value: 1.1e-05
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ++C+dCg  F rk +L++H r+H
  KWMTBOMO04338 383 FVCGDCGAAFARKFQLVNHGRVH 405
                    89*******************99 PP

  == domain 7  score: 13.9 bits;  conditional E-value: 0.00088
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    + Cp+Cgk F +k  L++H+++H
  KWMTBOMO04338 410 HACPVCGKEFLQKRTLVAHLKIH 432
                    56*******************99 PP

  == domain 8  score: 6.4 bits;  conditional E-value: 0.21
                    TTTEEESSHHHHHHH CS
        zf-C2H2   5 dCgksFkrksnLkrH 19 
                    +Cg+ Fk+k +L +H
  KWMTBOMO04338 442 ECGEAFKSKTDLYQH 456
                    7************99 PP

  == domain 9  score: 15.4 bits;  conditional E-value: 0.00031
                    ETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   3 CpdCgksFkrksnLkrHirtH 23 
                    Cp+Cg +F++k+ L  H r H
  KWMTBOMO04338 511 CPECGSCFNTKEALSLHVRLH 531
                    *******************99 PP

  == domain 10  score: 16.8 bits;  conditional E-value: 0.00011
                    EETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirtH 23 
                     C+dC+k F  k+ L +H+r+H
  KWMTBOMO04338 597 FCNDCSKGFAAKHGLLAHQRRH 618
                    6********************9 PP

  == domain 11  score: 18.1 bits;  conditional E-value: 4.2e-05
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ++C+ Cgk F +k +L+ H+r H
  KWMTBOMO04338 628 HVCGQCGKAFFQKNHLMLHQRQH 650
                    79*******************99 PP