Silkworm Genome Informatics Database

Gene

KWMTBOMO04365

Pre Gene Modal

BGIBMGA005253

Annotation

PREDICTED:_POU_domain?_class_6?_transcription_factor_2_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr8(-):4466374-4522952 View in EpiBrowser

Transcription factor

Pou

Location in the cell

Nuclear Reliability : 4.836

CDS

ATGAACTTCAGCAATACCAGGGGCAGAGCCAAGCCGCTGCCTACCGCTTGGCAGGCGGAATCGGATCGGGAGAGTGGCGCGAGTTCGCCGGAGGGGGGCACGACGCGGGCGCAATTAGCTGAGCCGCGTACCCCCTCGCCAAGAACCAGGACACCGCACCACCAGCACATGAATGGCTCCATGGCGTCGATGTTCCAAAACCTGCAGAACCTCGCGAGCATGCAACAGAACATGCCTATGTCGCAACAACTCCAGCAGCAGATGTCCCAGCAGATGTCGCAGCTGGCGGCAAATCTCCAGGGTCTGGCGTCCATGCCGTCGAATCCGGTTATCAACTCCCCTTTAAACTTGAGCGTCAGCGCCCCGGGAATGGGCTCCCCGAGCCCCGTGAGCAACAACAATATGCTGCCACCAGCGATGCCGTCTCCGATGCCGCAGCTAATACTCGCGTCAGGGCAACTGGTCCAAGGAATCCAGGGTGCTCAACTACTCATACCTACTTCGCAAGGAATCGCAACCCAAACAATCCTGACGATACCAGTCAACCACGTCAACTCTAACGATCAAATGGTGAACCTAGCTCTAAACAACGGCCAAGTCGTCTCCACGTCCCTAGCCAATCTCCAAGCGATGGCCCAACCCCATCAGCTACTCAACTCGAATCCCCAACAATCATCAAACATTCGACCCAACATGCTGAATCCAAGTTTATCGAATGCCCTACTCAACCCGGGCTTACCGAACTTCTTGTCTAACGGAGCGGCCAATGCCCAAGAATTGCTTCAAGCGTTACAACAACAGCAGCCTCAAGGGAACCACAGTTTGCTGCAGACGGTACAGCAGAACAATATGGCGCAGCAGATGCAAGGCAGAAGATCCTCTTCTCCAAGGCCTGAGAGGCATTACAAAGAGAGGGAGAGCTACGAACGGTATTCTAGTAGTGTTAGAGAGAGAAATGAACGTGAGGGAGCAGCAGCCATGAACAGTATTAATAGGCTTGCTGCGTCGAATGGCGAGATCACGATCACGACGTCCCACAACGCGAGCGGCGCGACTAGCAGCGCCGGCAGCGGAACCGGGCCGATTCCGTCGCCGCACGCACCCGTCAAACTATCGCCGGGCTCGGTGAAGTCGCCATCGCACGACGACGCCGATCTGTTGGCAGACTCACCAAACCAGCCAACGATCAGCCAGTCTTCCAGCAACGTAGTCGATGGGATCAACTTAGAAGACATCAAGGAATTCGCGAAGGCCTTCAAACTGCGACGACTTGGTCTGGGACTTACGCAGACCCAAGTAGGCCAAGCCCTGTCGGTCACCGAAGGACCAGCATATAGTCAAAGTGCGATCTGCAGTGCCCTGGCTTCGCAGATGCTAGCAGCTCAACTGTCTTCACAACAACAAAACATATTTGAGAAATTGGATATAACACCAAAAAGTGCGCAGAAAATCAAACCGGTGCTCGAACGTTGGATGAAGGAAGCCGAGGAAAGGTACGCATCCGGTCAAAATCATCTGACGGACTTCATTGGAATGGAGCCGAGCAAAAAGCGCAAACGGCGAACATCGTTCACACCTCAGGCCCTAGAACTGCTCAACGCGCACTTCGAAAGGAACACCCATCCATCTGGCACTGAAATAACCGGACTTGCCCATCAGTTAGGCTACGAACGAGAGGTCATCAGAATATGGTTTTGCAACAAGCGACAAGCTCTCAAGAACACTGTCCGGATGATGTCCAAAGGAATGGTCTAA

Protein

MNFSNTRGRAKPLPTAWQAESDRESGASSPEGGTTRAQLAEPRTPSPRTRTPHHQHMNGSMASMFQNLQNLASMQQNMPMSQQLQQQMSQQMSQLAANLQGLASMPSNPVINSPLNLSVSAPGMGSPSPVSNNNMLPPAMPSPMPQLILASGQLVQGIQGAQLLIPTSQGIATQTILTIPVNHVNSNDQMVNLALNNGQVVSTSLANLQAMAQPHQLLNSNPQQSSNIRPNMLNPSLSNALLNPGLPNFLSNGAANAQELLQALQQQQPQGNHSLLQTVQQNNMAQQMQGRRSSSPRPERHYKERESYERYSSSVRERNEREGAAAMNSINRLAASNGEITITTSHNASGATSSAGSGTGPIPSPHAPVKLSPGSVKSPSHDDADLLADSPNQPTISQSSSNVVDGINLEDIKEFAKAFKLRRLGLGLTQTQVGQALSVTEGPAYSQSAICSALASQMLAAQLSSQQQNIFEKLDITPKSAQKIKPVLERWMKEAEERYASGQNHLTDFIGMEPSKKRKRRTSFTPQALELLNAHFERNTHPSGTEITGLAHQLGYEREVIRIWFCNKRQALKNTVRMMSKGMV

Similarity

Belongs to the POU transcription factor family.

Uniprot

A0A212EY41

Pubmed

22118469

EMBL

AGBW02011632 OWR46377.1

Proteomes

UP000007151

Pfam

PF00046 Homeodomain + More
PF00157 Pou

Interpro

IPR000327   POU_dom        + More
IPR013847   POU
IPR001356   Homeobox_dom
IPR010982   Lambda_DNA-bd_dom_sf
IPR009057   Homeobox-like_sf

SUPFAM

SSF46689 SSF46689 + More
SSF47413 SSF47413

CDD

cd00086 homeodomain

ProteinModelPortal

A0A212EY41

PDB

3D1N E-value=1.70506e-51, Score=514

KEGG

101737716 K09368 POU domain transcription factor, class 6 | (RefSeq) POU domain, class 6, transcription factor

GO

GO:0003677 GO:0005634 GO:0003700 GO:0006355 GO:0016311 GO:0016791 GO:0006470 GO:0004674 GO:0009058 GO:0016742 GO:0003824

Subcellular location

Nucleus

Length:

584

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00566999999999999

Exp number, first 60 AAs:

7e-05

Total prob of N-in:

0.00462

outside

1 - 584

Pi

209.877792

Theta

165.169892

Tajima's D

0.84253

CLR

0.330333

CSRT

0.611169441527924

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics