HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	8.8	0.2	0.036	2.2	3	21	219	237
2	16.9	0.6	9.6e-05	0.0058	1	23	282	304
3	16.5	0.6	0.00013	0.0078	1	23	310	332
4	13.2	0.2	0.0015	0.09	1	23	337	359
5	14.6	0.4	0.00053	0.032	3	23	367	388
6	21.5	1.6	3.6e-06	0.00021	3	23	397	418

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.036
                    ETTTTEEESSHHHHHHHHH CS
        zf-C2H2   3 CpdCgksFkrksnLkrHir 21 
                    C  Cg  F++k nL +H +
  KWMTBOMO04332 219 CFACGVDFRSKTNLYKHEK 237
                    889**************76 PP

  == domain 2  score: 16.9 bits;  conditional E-value: 9.6e-05
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ++C++C+ +F+ +  L +H++ H
  KWMTBOMO04332 282 FQCSECSATFTVQKTLDSHMNLH 304
                    89*******************99 PP

  == domain 3  score: 16.5 bits;  conditional E-value: 0.00013
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y+C+ C+  ++++  L rH ++H
  KWMTBOMO04332 310 YRCKTCPAAYTSPTALSRHEKKH 332
                    9********************99 PP

  == domain 4  score: 13.2 bits;  conditional E-value: 0.0015
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y C++Cg+ Fk k+ L  H+ tH
  KWMTBOMO04332 337 YICDHCGRAFKIKEALIPHLDTH 359
                    89***************999998 PP

  == domain 5  score: 14.6 bits;  conditional E-value: 0.00053
                    ETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   3 CpdCgksFkrksnLkrHirt.H 23 
                    C+ C++++ +k  L+ Hi + H
  KWMTBOMO04332 367 CHLCDRRYAQKAALQLHIDRvH 388
                    ******************9988 PP

  == domain 6  score: 21.5 bits;  conditional E-value: 3.6e-06
                    ETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   3 CpdCgksFkrksnLkrHirt.H 23 
                    Cp+C+k+F+r s+Lk+H+++ H
  KWMTBOMO04332 397 CPVCPKRFPRMSLLKTHMMSeH 418
                    *******************999 PP