Silkworm Genome Informatics Database

Found: 1 items

Gene	Transcription Factor Family	Full Seq Evalue	Best Domain Evalue	Domain Number	Alignment Detail
KWMTBOMO04042	GCFC	7.9e-47	9.5e-47	1	+ View
HMM length of domain: 277 aa c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs. i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. Domain annotation for each sequence: # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to -- ----- ---- -------- -------- ------- ------ ------- ------ --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 159.8 5.0 1.1e-50 9.5e-47 13 232 3 202 Alignments for each domain: == domain 1 score: 159.8 bits; conditional E-value: 1.1e-50 GCFC 13 ekyleeykeaelselavslvaPllrealleWePLkdptalvdnlkswrklLeeevkekekkrkesttpyetllwelwlpsvrssvanewdprdpdp 108 e+y++ey++ l+ +a ++v+Pll + l +W+PL++p + + + +w+++L+e +++++llw+ +p++ +++++w+pr p+p KWMTBOMO04042 3 ETYPAEYEMLGLGTIAGNIVSPLLSALLATWSPLENPEEPLPVFVKWKQVLTE-------------EAFNSLLWQHYVPHIS-NAVESWNPRTPEP 84 78***********************************************75.............59**********.666****** PP GCFC 109 mlalleaWkplLPefvldnlleqlilpkLeaaveeWdPlskkqttrlvpihswifpwlpllgeerlepglvsdirrklrqaLdaWdps.rsalaiL 203 m++ l +W+ + P ++l++ +++++ aav+ WdP++++q p+h+w++pw +l ge+ + +++ ir++l++aL+aW+p sa+ +L KWMTBOMO04042 85 MVQALTSWRAVCPAWLLSSCASRYVVSRVLAAVRVWDPTRDTQ-----PVHQWVLPWHELAGESLSQ-AVYPLIRSRLSSALSAWHPAdGSARGVL 174 ***************************************.....**********66666.5***************9*** PP GCFC 204 kpWkdvfspaewdklllrhilpklaralq 232 +pWk+++ +ll+rh+lpkl+ +l KWMTBOMO04042 175 RPWKEAWGG-ALVALLHRHVLPKLEHCLM 202 ****9.99*************96 PP

Gene

Transcription Factor Family

Full Seq Evalue

Best Domain Evalue

Domain Number

Alignment Detail

KWMTBOMO04042

GCFC

7.9e-47

9.5e-47

+ View

						  HMM length of domain: 277 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	159.8	5.0	1.1e-50	9.5e-47	13	232	3	202

  Alignments for each domain:
  == domain 1  score: 159.8 bits;  conditional E-value: 1.1e-50
           GCFC  13 ekyleeykeaelselavslvaPllrealleWePLkdptalvdnlkswrklLeeevkekekkrkesttpyetllwelwlpsvrssvanewdprdpdp 108
                    e+y++ey++  l+ +a ++v+Pll + l +W+PL++p + +  + +w+++L+e             +++++llw+  +p++  +++++w+pr p+p
  KWMTBOMO04042   3 ETYPAEYEMLGLGTIAGNIVSPLLSALLATWSPLENPEEPLPVFVKWKQVLTE-------------EAFNSLLWQHYVPHIS-NAVESWNPRTPEP 84 
                    78*************************************************75.............59**************.666********** PP

           GCFC 109 mlalleaWkplLPefvldnlleqlilpkLeaaveeWdPlskkqttrlvpihswifpwlpllgeerlepglvsdirrklrqaLdaWdps.rsalaiL 203
                    m++ l +W+ + P ++l++     +++++ aav+ WdP++++q     p+h+w++pw +l ge+  +  +++ ir++l++aL+aW+p   sa+ +L
  KWMTBOMO04042  85 MVQALTSWRAVCPAWLLSSCASRYVVSRVLAAVRVWDPTRDTQ-----PVHQWVLPWHELAGESLSQ-AVYPLIRSRLSSALSAWHPAdGSARGVL 174
                    *******************************************.....**************66666.5*******************9******* PP

           GCFC 204 kpWkdvfspaewdklllrhilpklaralq 232
                    +pWk+++      +ll+rh+lpkl+ +l 
  KWMTBOMO04042 175 RPWKEAWGG-ALVALLHRHVLPKLEHCLM 202
                    ********9.99***************96 PP