Gene

KWMTBOMO04042

Pre Gene Modal

BGIBMGA010283

Annotation

PREDICTED:_septin_and_tuftelin_interacting_protein_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr7(+):9641741-9643805      View in EpiBrowser

Full name

Septin-interacting protein 1      

Alternative Name

Septin and tuftelin-interacting protein 1

Transcription factor

GCFC

Location in the cell

Extracellular   Reliability : 1.908

CDS

ATGTTAGAAACGTACCCAGCGGAATACGAGATGCTCGGTCTCGGCACGATAGCCGGCAACATCGTGAGTCCTCTGCTGAGCGCGCTTTTGGCCACCTGGAGTCCTCTGGAGAACCCCGAGGAGCCTTTGCCGGTGTTCGTCAAGTGGAAGCAGGTCCTCACCGAAGAGGCGTTCAACAGTTTGTTGTGGCAACACTACGTGCCGCACATCAGCAATGCCGTTGAGTCATGGAATCCTCGCACGCCGGAGCCAATGGTCCAGGCTCTAACGTCGTGGCGCGCCGTGTGCCCGGCCTGGCTGCTGAGCTCTTGCGCCAGCCGGTACGTGGTGTCCCGCGTGCTGGCTGCCGTCAGGGTGTGGGACCCCACCAGGGACACCCAGCCCGTGCACCAGTGGGTGCTGCCGTGGCACGAACTGGCCGGTGAGAGTCTATCGCAGGCGGTCTACCCCCTGATCCGGTCTCGTCTGTCGTCGGCGCTGTCCGCGTGGCACCCCGCGGACGGCTCGGCTCGCGGAGTCCTGCGCCCGTGGAAGGAGGCCTGGGGCGGAGCCCTGGTCGCCCTGTTGCATCGGCACGTGCTCCCGAAACTGGAGCACTGTCTCATGCACGCGCCGCTCGATCTTGTCGGCGGAGAGAATAGTACGTGTAAGGTTTTGTTTTGCAATTTTCGAATGTAG

Protein

MLETYPAEYEMLGLGTIAGNIVSPLLSALLATWSPLENPEEPLPVFVKWKQVLTEEAFNSLLWQHYVPHISNAVESWNPRTPEPMVQALTSWRAVCPAWLLSSCASRYVVSRVLAAVRVWDPTRDTQPVHQWVLPWHELAGESLSQAVYPLIRSRLSSALSAWHPADGSARGVLRPWKEAWGGALVALLHRHVLPKLEHCLMHAPLDLVGGENSTCKVLFCNFRM

Description

May be involved in pre-mRNA splicing.

Subunit

Identified in the spliceosome C complex (By similarity). Interacts with pnut.

Similarity

Belongs to the TFP11/STIP family.

Keywords

Coiled coil   Complete proteome   mRNA processing   mRNA splicing   Nucleus   Phosphoprotein   Reference proteome   Spliceosome  

Feature

chain  Septin-interacting protein 1

Uniprot

H9JL82   A0A2H1WJM9   A0A194RKK6   A0A2A4K201   A0A212FCY7   A0A2W1BUW5   + More
U4U4Z9   A1XDA7   A0A139WJU9   A0A182F3B0   A0A182NAK3   A0A084VME3   A0A182JXN2   E0VXQ2   A0A182J5M6   X2J8R0   Q9Y103   A0A1W4V391   D2A2N9   W5JQZ1   B4JC62   B4LRI9   A0A1W4WLB1   A0A2J7RRW6   A0A067R831   B3N567   A0A182GJF2   C6ETQ2   A0A0L0BWZ6   A0A0T6AYG7   A1XDB2   W8BBQ4   A0A182VK21   C6ETQ1   A1XDB5   A0A182KWD4   A0A1S4G738   B3MML6   A0A182IBE0   A0A182SHH9   Q16YS1   A0A3B0JVD0   A0A182X6B7   A1XDB4   A0A1Y1LAF4   A0A182VTE4   A0A182PIZ5   A0A182TUL0   A1XDB1   Q29KP1   A1XDA9   B4KGZ0   A0A182R3Y2   A0A182YR69   A0A336M495   A0A0V1EDX5   A0A0V1EDY8   A0A0V0YB90   A0A1I8PX56   A0A0V1FU80   A0A195BBD2   A0A0V1K4S5   A0A0V1IV26   B4MV34   A0A151K073   F4WE40   B0W0H4   A0A0J9QWB0   A0A0V1MR06   C6ETP8   A0A0V1H8A3   A0A158NUU0   A0A1Q3F2N3   A0A0V0RQR0   A1XDA8   A0A2A3EJI9   A0A182Q9K9   A0A0V0V0G9   A0A0V1LSS2   A0A0V0WJY9   A0A0V0WI97   A0A0V1PGI3   A0A1B6CJS3   A0A1J1I0P0   A0A182LTI5   C6ETR7   A0A151J015   A0A1Y3E3L3   A0A146KZW4   A0A3Q0IP11   A0A1Y1LAH8   A0A1B6D3D3   C6ETR2   A0A0K8SVR8   A0A0A9X2E3   C6ETP9   A0A1B0ANU3  

Pubmed

19121390    26354079    22118469    28756777    23537049    17289020    + More
18362917    19820115    24438588    20566863    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    11884525    12537569    18327897    20920257    23761445    17994087    24845553    26483478    26108605    17550304    24495485    12364791    20966253    17510324    28004739    15632085    23185243    25244985    21719571    22936249    21347285    26823975    25401762   

EMBL

BABH01011772    BABH01011773    ODYU01009050    SOQ53176.1    KQ460075    KPJ17954.1    + More
NWSH01000282    PCG77793.1    AGBW02009118    OWR51615.1    KZ149930    PZC77424.1    KB631738    ERL85681.1    DQ342040    KQ971338    ABC69932.1    KYB28201.1    KYB28202.1    ATLV01014586    KE524975    KFB39137.1    DS235833    EEB18158.1    AE014134    AHN54151.1    AF221101    AF145670    EFA02753.2    ADMH02000364    ETN66817.1    CH916368    EDW03075.1    CH940649    EDW63584.1    NEVH01000597    PNF43583.1    KK852872    KDR14564.1    CH954177    EDV57897.1    JXUM01012806    KQ560362    KXJ82820.1    EU707400    ACJ45810.1    JRES01001211    KNC24562.1    LJIG01022537    KRT80052.1    DQ342045    CM000157    ABC69937.1    EDW88899.1    GAMC01007895    JAB98660.1    EU707399    ACJ45809.1    AAAB01008944    DQ342048    HACL01000127    ABC69940.1    CFW94421.1    CH902620    EDV31907.1    APCN01000672    CH477510    EAT39778.1    OUUW01000010    SPP86034.1    DQ342047    ABC69939.1    GEZM01061224    GEZM01061217    JAV70632.1    DQ342044    CH480820    ABC69936.1    EDW54403.1    DQ342043    CH379061    ABC69935.1    EAL33133.2    DQ342042    CH479189    ABC69934.1    EDW25521.1    CH933807    EDW12201.1    UFQS01000144    UFQT01000144    SSX00438.1    SSX20818.1    JYDR01000049    KRY72029.1    KRY72030.1    JYDU01000034    KRX97232.1    JYDT01000029    KRY89606.1    KQ976532    KYM81525.1    JYDV01000015    KRZ42247.1    JYDS01000083    KRZ26560.1    CH963857    EDW76379.2    KQ981296    KYN43118.1    GL888102    EGI67478.1    DS231817    EDS39713.1    CM002910    KMY88357.1    JYDO01000053    KRZ74215.1    EU707396    ACJ45806.1    JYDP01000116    KRZ06570.1    ADTU01026715    GFDL01013258    JAV21787.1    JYDL01000100    KRX16764.1    DQ342041    ABC69933.1    KZ288238    PBC31346.1    AXCN02002191    JYDN01000110    KRX57019.1    JYDW01000008    KRZ62507.1    JYDK01000107    KRX76145.1    JYDK01000125    KRX75349.1    JYDM01000013    KRZ95332.1    GEDC01023562    JAS13736.1    CVRI01000038    CRK93763.1    AXCM01004755    EU707416    ACJ45824.1    KQ980670    KYN14624.1    LVZM01023938    OUC39645.1    GDHC01018087    JAQ00542.1    GEZM01061223    JAV70633.1    GEDC01017110    JAS20188.1    EU707410    ACJ45820.1    GBRD01008428    JAG57393.1    GBHO01029490    JAG14114.1    EU707397    ACJ45807.1    JXJN01001011    JXJN01001012   

Proteomes

UP000005204    UP000053240    UP000218220    UP000007151    UP000030742    UP000007266    + More
UP000069272    UP000075884    UP000030765    UP000075881    UP000009046    UP000075880    UP000000803    UP000192221    UP000000673    UP000001070    UP000008792    UP000192223    UP000235965    UP000027135    UP000008711    UP000069940    UP000249989    UP000037069    UP000002282    UP000075903    UP000075882    UP000007801    UP000075840    UP000075901    UP000008820    UP000268350    UP000076407    UP000075920    UP000075885    UP000075902    UP000001292    UP000001819    UP000008744    UP000009192    UP000075900    UP000076408    UP000054632    UP000054815    UP000095300    UP000054995    UP000078540    UP000054826    UP000054805    UP000007798    UP000078541    UP000007755    UP000002320    UP000054843    UP000055024    UP000005205    UP000054630    UP000005203    UP000242457    UP000075886    UP000054681    UP000054721    UP000054673    UP000054924    UP000183832    UP000075883    UP000078492    UP000243006    UP000079169    UP000092460   

PRIDE

H9JL82    X2J8R0    Q9Y103   

Pfam

PF12457   TIP_N        + More
PF07842   GCFC
PF01585   G-patch
PF00831   Ribosomal_L29

Interpro

IPR000467   G_patch_dom        + More
IPR022783   GCFC_dom       
IPR022159   STIP/TFIP11_N       
IPR024933   STIP       
IPR018254   Ribosomal_L29_CS       
IPR001854   Ribosomal_L29/L35       
IPR036049   Ribosomal_L29/L35_sf       

SUPFAM

SSF46561   SSF46561       

ProteinModelPortal

H9JL82   A0A2H1WJM9   A0A194RKK6   A0A2A4K201   A0A212FCY7   A0A2W1BUW5   + More
U4U4Z9   A1XDA7   A0A139WJU9   A0A182F3B0   A0A182NAK3   A0A084VME3   A0A182JXN2   E0VXQ2   A0A182J5M6   X2J8R0   Q9Y103   A0A1W4V391   D2A2N9   W5JQZ1   B4JC62   B4LRI9   A0A1W4WLB1   A0A2J7RRW6   A0A067R831   B3N567   A0A182GJF2   C6ETQ2   A0A0L0BWZ6   A0A0T6AYG7   A1XDB2   W8BBQ4   A0A182VK21   C6ETQ1   A1XDB5   A0A182KWD4   A0A1S4G738   B3MML6   A0A182IBE0   A0A182SHH9   Q16YS1   A0A3B0JVD0   A0A182X6B7   A1XDB4   A0A1Y1LAF4   A0A182VTE4   A0A182PIZ5   A0A182TUL0   A1XDB1   Q29KP1   A1XDA9   B4KGZ0   A0A182R3Y2   A0A182YR69   A0A336M495   A0A0V1EDX5   A0A0V1EDY8   A0A0V0YB90   A0A1I8PX56   A0A0V1FU80   A0A195BBD2   A0A0V1K4S5   A0A0V1IV26   B4MV34   A0A151K073   F4WE40   B0W0H4   A0A0J9QWB0   A0A0V1MR06   C6ETP8   A0A0V1H8A3   A0A158NUU0   A0A1Q3F2N3   A0A0V0RQR0   A1XDA8   A0A2A3EJI9   A0A182Q9K9   A0A0V0V0G9   A0A0V1LSS2   A0A0V0WJY9   A0A0V0WI97   A0A0V1PGI3   A0A1B6CJS3   A0A1J1I0P0   A0A182LTI5   C6ETR7   A0A151J015   A0A1Y3E3L3   A0A146KZW4   A0A3Q0IP11   A0A1Y1LAH8   A0A1B6D3D3   C6ETR2   A0A0K8SVR8   A0A0A9X2E3   C6ETP9   A0A1B0ANU3  

KEGG

100037443    K13103 tuftelin-interacting protein 11 | (RefSeq) STIP; septin and tuftelin interacting protein

GO

GO:0003676   GO:0005681   GO:0008380   GO:0006397   GO:0071008   GO:0000390   GO:0016787   GO:0000398   GO:0071011   GO:0005737   GO:0071013   GO:0003735   GO:0006412   GO:0005840   GO:0003677   GO:0005634   GO:0006355   GO:0005524   GO:0007179   GO:0006811   GO:0006032   GO:0016021   GO:0004672   GO:0048384  

Subcellular location

Nucleus  

Length:

225

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

12.63777

Exp number, first 60 AAs:

12.06702

Total prob of N-in:

0.54295

POSSIBLE N-term signal

sequence

outside

1  -  225

 

 

Pi

259.629357

Theta

175.68781

Tajima's D

2.085907

CLR

0.00477

CSRT

0.896655167241638

Interpretation

Uncertain