HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	28.1	1.1	2.9e-08	1.7e-06	1	23	12	34
2	15.1	0.3	0.00038	0.023	1	23	40	62
3	15.4	0.2	0.0003	0.018	1	23	68	90
4	19.9	0.1	1.1e-05	0.00067	1	23	96	118
5	6.0	0.2	0.29	17	1	11	124	134

  Alignments for each domain:
  == domain 1  score: 28.1 bits;  conditional E-value: 2.9e-08
                   EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2  1 ykCpdCgksFkrksnLkrHirtH 23
                   y+C +Cg++F+++ +L  H+r+H
  KWMTBOMO15212 12 YPCRVCGRRFNQSGHLAIHMRMH 34
                   99********************9 PP

  == domain 2  score: 15.1 bits;  conditional E-value: 0.00038
                   EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2  1 ykCpdCgksFkrksnLkrHirtH 23
                   y+C+ C+k Fk k +   H+rtH
  KWMTBOMO15212 40 YPCDLCPKAFKVKVERDDHRRTH 62
                   99********************9 PP

  == domain 3  score: 15.4 bits;  conditional E-value: 0.0003
                   EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2  1 ykCpdCgksFkrksnLkrHirtH 23
                   + C  C+k+F+    L+ H r+H
  KWMTBOMO15212 68 FACAACHKTFTAAARLREHARIH 90
                   67999****************99 PP

  == domain 4  score: 19.9 bits;  conditional E-value: 1.1e-05
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y+C++Cg  F+r++  ++H  +H
  KWMTBOMO15212  96 YRCDICGAAFRRPYARTVHTLIH 118
                    9******************9998 PP

  == domain 5  score: 6.0 bits;  conditional E-value: 0.29
                    EEETTTTEEES CS
        zf-C2H2   1 ykCpdCgksFk 11 
                    ++C++Cg  F+
  KWMTBOMO15212 124 HECDVCGTAFR 134
                    78*******96 PP