HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	12.7	2.5	0.0022	0.13	1	23	246	269
2	20.4	2.7	7.9e-06	0.00047	2	23	277	298
3	1.5	0.9	7.8	4.7e+02	1	23	302	324
4	16.9	2.0	0.0001	0.0061	1	23	329	352
5	6.2	0.4	0.25	15	3	23	359	380
6	1.6	0.2	7.4	4.4e+02	2	19	390	407
7	15.3	0.7	0.00032	0.019	3	23	422	443

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.0022
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    ++C+ C ks+ + +nL++H ++ H
  KWMTBOMO03663 246 FRCSLCYKSYMDDDNLNKHFKKlH 269
                    89******************9999 PP

  == domain 2  score: 20.4 bits;  conditional E-value: 7.9e-06
                    EETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirtH 23 
                    +C++C+ ++++k +LkrH++tH
  KWMTBOMO03663 277 VCDICKTRYRDKKMLKRHMKTH 298
                    6********************9 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 7.8
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    + C  C+ +   +s+ + H+++H
  KWMTBOMO03663 302 FACRQCKHVSILSSQAVEHYNMH 324
                    78*******99999999999999 PP

  == domain 4  score: 16.9 bits;  conditional E-value: 0.0001
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    ykC  C+k++  +  + +Hir  H
  KWMTBOMO03663 329 YKCQNCDKTYDKQTTYLAHIRYsH 352
                    9********************988 PP

  == domain 5  score: 6.2 bits;  conditional E-value: 0.25
                    ETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   3 CpdCgksFkrksnLkrHirt.H 23 
                    C+ Cg+s+ +   Lk H++  H
  KWMTBOMO03663 359 CELCGESYVSETGLKCHQNLvH 380
                    99*************9999888 PP

  == domain 6  score: 1.6 bits;  conditional E-value: 7.4
                    EETTTTEEESSHHHHHHH CS
        zf-C2H2   2 kCpdCgksFkrksnLkrH 19 
                    kC  C  +F +++ +++H
  KWMTBOMO03663 390 KCANCETRFLNNEAYRTH 407
                    7********999999999 PP

  == domain 7  score: 15.3 bits;  conditional E-value: 0.00032
                    ETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   3 CpdCgksFkrksnLkrHirt.H 23 
                    C +Cg+sF ++ +L+ H+   H
  KWMTBOMO03663 422 CAHCGRSFDSRPSLREHLLEtH 443
                    99***************99888 PP