HMM length of domain: 57 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	68.9	3.4	1.2e-21	2.2e-19	1	57	15	71
2	0.0	0.0	3.8	7.1e+02	8	22	124	138

  Alignments for each domain:
  == domain 1  score: 68.9 bits;  conditional E-value: 1.2e-21
                   ST-SSSS-HHHHHHHHHHHHHSSS-SHHHHHHHHHHHTS-HHHHHHHHHHHHHHHHH CS
       Homeobox  1 rrkRttftkeqleeLeelFeenrypsaeereeLAkklgLeerqVkvWFqNrRakekk 57
                   +r R +ft+eq++ Le++F++++y+sa +r+e+A+ ++++e+++k+WFqNrR++ekk
  KWMTBOMO03365 15 KRIRSAFTTEQINYLENEFKKSHYISAVQRKEIANIVNVPEKVIKIWFQNRRMREKK 71
                   688*****************************************************8 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 3.8
                    -HHHHHHHHHHHHHS CS
       Homeobox   8 tkeqleeLeelFeen 22 
                    t++q++ L++ + ++
  KWMTBOMO03365 124 TSKQIDDLNKSYDKD 138
                    899*********984 PP