HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	4.6	1.9	0.82	49	3	23	32	52
2	20.3	1.1	8.2e-06	0.00049	1	23	90	113
3	14.7	0.2	0.00049	0.029	1	23	115	137
4	1.9	0.3	5.8	3.5e+02	1	19	146	164
5	14.4	0.1	0.00061	0.036	1	23	173	195
6	4.8	0.9	0.7	42	2	23	221	243
7	3.3	3.5	2.1	1.2e+02	1	16	250	265
8	17.4	0.1	7e-05	0.0042	1	23	278	300
9	10.7	7.4	0.009	0.54	1	23	310	333
10	6.8	0.6	0.16	9.4	2	20	339	359
11	8.1	4.8	0.061	3.6	1	23	366	388
12	14.4	1.6	0.00063	0.038	1	20	393	412
13	18.2	1.6	3.8e-05	0.0022	1	23	421	443
14	11.7	1.2	0.0044	0.26	1	23	448	470
15	13.4	2.9	0.0013	0.077	1	23	476	499

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.82
                   ETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2  3 CpdCgksFkrksnLkrHirtH 23
                   C++C+ +F  k ++  H+  H
  KWMTBOMO03214 32 CHICKLTFGKKKEYDEHYVGH 52
                   ***********9999997655 PP

  == domain 2  score: 20.3 bits;  conditional E-value: 8.2e-06
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    ++C+dC ++++ +s+L +Hi + H
  KWMTBOMO03214  90 FTCNDCYRMYSKQSLLLKHIASmH 113
                    89******************9988 PP

  == domain 3  score: 14.7 bits;  conditional E-value: 0.00049
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    + C++C++sF++k +L  H  +H
  KWMTBOMO03214 115 FICKICKQSFTSKNELLIHNIIH 137
                    78*****************8777 PP

  == domain 4  score: 1.9 bits;  conditional E-value: 5.8
                    EEETTTTEEESSHHHHHHH CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrH 19 
                    ++C  Cgk   + ++ + H
  KWMTBOMO03214 146 FPCMTCGKYIDTADMCELH 164
                    89*****987777766666 PP

  == domain 5  score: 14.4 bits;  conditional E-value: 0.00061
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ++Cp+C +sF+++ +  +H+ +H
  KWMTBOMO03214 173 FPCPVCEESFPNRPEILKHLTKH 195
                    89******************999 PP

  == domain 6  score: 4.8 bits;  conditional E-value: 0.7
                    EETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirt.H 23 
                    +C  C ++F+++ ++  H+ t H
  KWMTBOMO03214 221 YCCFCEETFNNRIEYDLHYETeH 243
                    599***************99988 PP

  == domain 7  score: 3.3 bits;  conditional E-value: 2.1
                    EEETTTTEEESSHHHH CS
        zf-C2H2   1 ykCpdCgksFkrksnL 16 
                    y+C++C+k ++   ++
  KWMTBOMO03214 250 YTCTICKKQYNKYALF 265
                    9*********766655 PP

  == domain 8  score: 17.4 bits;  conditional E-value: 7e-05
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ++C++Cgk F+r s+L+ H+  H
  KWMTBOMO03214 278 FECSECGKLFPRLSLLVLHRAAH 300
                    89*****************9877 PP

  == domain 9  score: 10.7 bits;  conditional E-value: 0.009
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    ++C++C+ +F++   L+ H r+ H
  KWMTBOMO03214 310 FPCSHCDCTFSTLQRLTEHHRReH 333
                    89********************99 PP

  == domain 10  score: 6.8 bits;  conditional E-value: 0.16
                    EET..TTTEEESSHHHHHHHH CS
        zf-C2H2   2 kCp..dCgksFkrksnLkrHi 20 
                    +C+  +C+ +F +  +L  H+
  KWMTBOMO03214 339 RCHrpGCDLTFESFKDLILHY 359
                    7*****************996 PP

  == domain 11  score: 8.1 bits;  conditional E-value: 0.061
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y C  Cg  F++ s+ ++H+++H
  KWMTBOMO03214 366 YCCRQCGLQFSTLSSCEKHLNVH 388
                    88*******************99 PP

  == domain 12  score: 14.4 bits;  conditional E-value: 0.00063
                    EEETTTTEEESSHHHHHHHH CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHi 20 
                    y Cp+C++++ +k++L +Hi
  KWMTBOMO03214 393 YSCPVCNQRYQHKYQLIKHI 412
                    89*****************8 PP

  == domain 13  score: 18.2 bits;  conditional E-value: 3.8e-05
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ++C+ Cgks++ ks L +H +tH
  KWMTBOMO03214 421 HVCTTCGKSYNAKSRLIQHAKTH 443
                    79********************9 PP

  == domain 14  score: 11.7 bits;  conditional E-value: 0.0044
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    +kC++C k F   ++L++H ++H
  KWMTBOMO03214 448 FKCTYCRKAFLKDYDLQQHVNIH 470
                    8*******************999 PP

  == domain 15  score: 13.4 bits;  conditional E-value: 0.0013
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    ykC+ C+k F + sn  +H+ + H
  KWMTBOMO03214 476 YKCSLCPKAFASYSNHYKHMLRvH 499
                    9********************999 PP