HMM length of domain: 44 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	1.0	3.3	0.48	4.1e+02	18	44	3	24
2	19.4	0.5	8.9e-07	0.00075	4	44	58	97
3	15.1	0.8	1.9e-05	0.016	1	39	143	174
4	16.4	0.1	7.6e-06	0.0065	9	44	212	246

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.48
                   EETTTTEE----SSTHHHHHHHHHS-H CS
         zf-BED 18 vCryCgkilsrgggttnLkrHLrrkHp 44
                   +C++C    ++     n  rHLr kHp
  KWMTBOMO03288  3 RCKFCSVMMKS-----NQARHLRAKHP 24
                   67777776666.....56799999998 PP

  == domain 2  score: 19.4 bits;  conditional E-value: 8.9e-07
                   TSSS----GGSS--EETTTTEE----SST.HHHHHHHHHS-H CS
         zf-BED  4 WkyftpvslkeqkavCryCgkilsrgggt.tnLkrHLrrkHp 44
                   ++y +++s  e+k +C++C  il   +g+  n+krHL+ kHp
  KWMTBOMO03288 58 KDYLKKIS--EGKYECKICSTILRMPHGIyANMKRHLKMKHP 97
                   57889999..**************9977747**********8 PP

  == domain 3  score: 15.1 bits;  conditional E-value: 1.9e-05
                    --TTSSS----GGSS--EETTTTEE----SSTHHHHHHH CS
         zf-BED   1 skvWkyftpvslkeqkavCryCgkilsrgggttnLkrHL 39 
                    s +W+y++ ++   ++ +C+ Cg++ +++       rHL
  KWMTBOMO03288 143 SSIWNYYSVLK--GNFSRCKLCGAVMKSN-----QARHL 174
                    579********..**************96.....33344 PP

  == domain 4  score: 16.4 bits;  conditional E-value: 7.6e-06
                    ---GGSS--EETTTTEE----.SSTHHHHHHHHHS-H CS
         zf-BED   9 pvslkeqkavCryCgkilsrg.ggttnLkrHLrrkHp 44 
                    ++   ++k +C++C +il    g   n+krH +rkHp
  KWMTBOMO03288 212 KIG--DGKYECKICSAILRMPsGLYGNMKRHFKRKHP 246
                    444..8999*********98878999**********8 PP