Silkworm Genome Informatics Database

Gene

KWMTBOMO03288 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA006450

Annotation

PREDICTED:_uncharacterized_protein_LOC105842253_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr6(+):3317116-3320347 View in EpiBrowser

Transcription factor

zf-BED

Location in the cell

Nuclear Reliability : 3.422

CDS

ATGTACCGTTGTAAGTTTTGCAGCGTGATGATGAAGAGCAACCAGGCTAGACATTTAAGAGCGAAACATCCGAAGGCGTTCAAGCAATGGAAAGAGAGTAGTAAAAGCTTCGGAGAAACAAAATACAGCAAAGTTGTACCATCGCATCAATCAGCTAGACGTGGCTGGATAAAAGATTACCTGAAAAAAATCAGCGAAGGAAAATACGAATGCAAAATATGCTCGACCATTTTGAGAATGCCTCATGGAATCTACGCTAATATGAAGAGACATTTGAAAATGAAACATCCGTTGATATATGAAGAAGAAATGAAAGTTAACGGTGAACAATCTACGGCTACTGATGTGGTAGAGTACGTTGTTGAGTATGTTGATGATGATGCCACGTCCATTGACAGTGTAGATACGAACGGATCAAGAAGAAGAAGTTCAATATGGAACTATTACAGCGTCTTGAAAGGAAATTTTAGCCGTTGTAAGCTTTGTGGCGCGGTAATGAAATCCAACCAAGCTAGGCATTTGAAAATCAAACATGTGAAGGCGTTTAAGCAATGGCAGGAGACCAGTAAGGTAAATCGTAAGGTTAAACCACAAAGTTCGGGCAGACGCGGCTGGATACAAGACTATGTGAAAAAAATCGGCGACGGAAAATACGAATGCAAAATATGTTCAGCTATTTTGAGAATGCCCAGTGGGCTCTATGGTAATATGAAGAGGCATTTCAAACGCAAACACCCGATAATATATGAGGAAGAAATGAAAATTTTCAGCGAACAATCTAAGATTGAGGACGTGGTAGAATATGTTGTGGAATATATTGATGATGATGATGATGATGATGATGCTATTTCAATGAACAGTGATGAATTATTAAGTGCTATAAAAGGAGAGGTTCAAAAAGAAATTAATGTAAATAATAGATTAGATTAG

Protein

MYRCKFCSVMMKSNQARHLRAKHPKAFKQWKESSKSFGETKYSKVVPSHQSARRGWIKDYLKKISEGKYECKICSTILRMPHGIYANMKRHLKMKHPLIYEEEMKVNGEQSTATDVVEYVVEYVDDDATSIDSVDTNGSRRRSSIWNYYSVLKGNFSRCKLCGAVMKSNQARHLKIKHVKAFKQWQETSKVNRKVKPQSSGRRGWIQDYVKKIGDGKYECKICSAILRMPSGLYGNMKRHFKRKHPIIYEEEMKIFSEQSKIEDVVEYVVEYIDDDDDDDDAISMNSDELLSAIKGEVQKEINVNNRLD

Uniprot

A0A0L7L958 A0A2A4IUG2 H9JA97 A0A1I8NBZ1 A0A2H1VL97 A0A0K2U6Y7 + More
A0A1A9Z8A8 A0A1A9V3E4 A0A1E1W179 A0A1A9W7Y7 A0A1B0FB23 A0A1B0AYD2 A0A0Q9XE10 B4K5Z3 A0A0K2U717 A0A0M4ENH4 A0A182VUJ5 A0A0K8UC08 W8C856 W8CCS0 A0A084W6N9 B4M5R2 A0A034WUL0 A0A3B1IIM7 A0A2D0SIS2 A0A2D0SHJ8 A0A2D0SHK5

Pubmed

26227816 19121390 25315136 17994087 24495485 24438588 + More
25348373 25329095

EMBL

JTDY01002124 KOB72053.1 NWSH01007251 PCG63028.1 BABH01008926 BABH01008927 + More
BABH01008928 ODYU01002994 SOQ41192.1 HACA01016663 CDW34024.1 GDQN01010331 JAT80723.1 CCAG010023703 JXJN01005667 CH933806 KRG02008.1 EDW16230.2 HACA01016662 CDW34023.1 CP012526 ALC47165.1 GDHF01028191 JAI24123.1 GAMC01003209 JAC03347.1 GAMC01003211 JAC03345.1 ATLV01020888 KE525309 KFB45883.1 CH940652 EDW58988.1 GAKP01000926 GAKP01000925 JAC58027.1

Proteomes

UP000037510 UP000218220 UP000005204 UP000095301 UP000092445 UP000078200 + More
UP000091820 UP000092444 UP000092460 UP000009192 UP000092553 UP000075920 UP000030765 UP000008792 UP000018467 UP000221080

PRIDE

H9JA97

Pfam

PF02892 zf-BED + More
PF04500 FLYWCH

Interpro

IPR013087   Znf_C2H2_type        + More
IPR036236   Znf_C2H2_sf
IPR007588   Znf_FLYWCH
IPR003656   Znf_BED

SUPFAM

SSF57667 SSF57667

ProteinModelPortal

A0A0L7L958 A0A2A4IUG2 H9JA97 A0A1I8NBZ1 A0A2H1VL97 A0A0K2U6Y7 + More
A0A1A9Z8A8 A0A1A9V3E4 A0A1E1W179 A0A1A9W7Y7 A0A1B0FB23 A0A1B0AYD2 A0A0Q9XE10 B4K5Z3 A0A0K2U717 A0A0M4ENH4 A0A182VUJ5 A0A0K8UC08 W8C856 W8CCS0 A0A084W6N9 B4M5R2 A0A034WUL0 A0A3B1IIM7 A0A2D0SIS2 A0A2D0SHJ8 A0A2D0SHK5

KEGG

105842253 no KO assigned | (RefSeq) uncharacterized LOC105842253

GO

GO:0003677 GO:0006644 GO:0050482 GO:0005509 GO:0016042 GO:0016020 GO:0005634 GO:0006270 GO:0042555 GO:0048384 GO:0003676

Length:

309

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00155

Exp number, first 60 AAs:

0

Total prob of N-in:

0.07378

outside

1 - 309

Pi

143.351159

Theta

157.960952

Tajima's D

-0.362091

CLR

0.833359

CSRT

0.276386180690965

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics