Silkworm Genome Informatics Database

Found: 1 items

Gene	Transcription Factor Family	Full Seq Evalue	Best Domain Evalue	Domain Number	Alignment Detail
KWMTBOMO03284	zf-BED	5.3e-18	6.2e-08	3	+ View
HMM length of domain: 44 aa c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs. i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. Domain annotation for each sequence: # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to -- ----- ---- -------- -------- ------- ------ ------- ------ --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 32.5 2.9 7.3e-11 6.2e-08 3 44 95 135 2 32.1 2.4 9.3e-11 7.8e-08 3 43 194 233 3 9.7 0.4 0.00094 0.79 3 43 250 292 Alignments for each domain: == domain 1 score: 32.5 bits; conditional E-value: 7.3e-11 TTSSS----GGSS--EETTTTEE----.SSTHHHHHHHHHS-H CS zf-BED 3 vWkyftpvslkeqkavCryCgkilsrg.ggttnLkrHLrrkHp 44 vWkyf+++s + +C+ C+ +ls + +t+n+ rH r++Hp KWMTBOMO03284 95 VWKYFDKLS--NIIFRCNLCNVVLSIKgCNTNNMNRHVRTRHP 135 9******..99**********99*********8 PP == domain 2 score: 32.1 bits; conditional E-value: 9.3e-11 TTSSS----GGSS--EETTTTEE----.SSTHHHHHHHHHS- CS zf-BED 3 vWkyftpvslkeqkavCryCgkilsrg.ggttnLkrHLrrkH 43 +W+yf++v+ ++ a+C+ C +++s g + t n+ rHL+ H KWMTBOMO03284 194 IWSYFSRVT--STQAQCKLCSRQISHGgNATGNMNRHLKMIH 233 8****..************999****9777 PP == domain 3 score: 9.7 bits; conditional E-value: 0.00094 TTSSS----GGSS--EETTTTEE----....SSTHHHHHHHHHS- CS zf-BED 3 vWkyftpvslkeqkavCryCgkilsrg....ggttnLkrHLrrkH 43 +Wk f +++ + C++C + g +++t +HL+ H KWMTBOMO03284 250 IWKVFEECE--DDAYSCKICQFRCEKGgdeiTNVTSILSHLKVVH 292 588899999..99999***********************8777 PP

Gene

Transcription Factor Family

Full Seq Evalue

Best Domain Evalue

Domain Number

Alignment Detail

KWMTBOMO03284

zf-BED

5.3e-18

6.2e-08

+ View

						  HMM length of domain: 44 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	32.5	2.9	7.3e-11	6.2e-08	3	44	95	135
2	32.1	2.4	9.3e-11	7.8e-08	3	43	194	233
3	9.7	0.4	0.00094	0.79	3	43	250	292

  Alignments for each domain:
  == domain 1  score: 32.5 bits;  conditional E-value: 7.3e-11
                    TTSSS----GGSS--EETTTTEE----.SSTHHHHHHHHHS-H CS
         zf-BED   3 vWkyftpvslkeqkavCryCgkilsrg.ggttnLkrHLrrkHp 44 
                    vWkyf+++s  +   +C+ C+ +ls +  +t+n+ rH r++Hp
  KWMTBOMO03284  95 VWKYFDKLS--NIIFRCNLCNVVLSIKgCNTNNMNRHVRTRHP 135
                    9********..99**************99*************8 PP

  == domain 2  score: 32.1 bits;  conditional E-value: 9.3e-11
                    TTSSS----GGSS--EETTTTEE----.SSTHHHHHHHHHS- CS
         zf-BED   3 vWkyftpvslkeqkavCryCgkilsrg.ggttnLkrHLrrkH 43 
                    +W+yf++v+  ++ a+C+ C +++s g + t n+ rHL+  H
  KWMTBOMO03284 194 IWSYFSRVT--STQAQCKLCSRQISHGgNATGNMNRHLKMIH 233
                    8********..****************999********9777 PP

  == domain 3  score: 9.7 bits;  conditional E-value: 0.00094
                    TTSSS----GGSS--EETTTTEE----....SSTHHHHHHHHHS- CS
         zf-BED   3 vWkyftpvslkeqkavCryCgkilsrg....ggttnLkrHLrrkH 43 
                    +Wk f +++  +    C++C +    g    +++t   +HL+  H
  KWMTBOMO03284 250 IWKVFEECE--DDAYSCKICQFRCEKGgdeiTNVTSILSHLKVVH 292
                    588899999..99999*************************8777 PP