HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	8.4	0.5	0.05	3	1	19	113	131
2	17.3	8.9	7.4e-05	0.0044	1	23	141	163
3	12.8	0.8	0.0021	0.12	1	23	169	191
4	18.5	1.8	3.2e-05	0.0019	1	23	197	219
5	18.9	1.5	2.4e-05	0.0014	1	23	225	247
6	12.3	0.2	0.003	0.18	1	23	265	287
7	28.6	2.5	1.9e-08	1.2e-06	1	23	293	316

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.05
                    EEETTTTEEESSHHHHHHH CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrH 19 
                    y C+ C+k+F  +s+   H
  KWMTBOMO03238 113 YICTLCDKKFHARSQVAYH 131
                    89*********99998888 PP

  == domain 2  score: 17.3 bits;  conditional E-value: 7.4e-05
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    + C++C+ksF + s++k H+r+H
  KWMTBOMO03238 141 FHCDECKKSFATHSHFKYHMRVH 163
                    78********************9 PP

  == domain 3  score: 12.8 bits;  conditional E-value: 0.0021
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y C++Cg sF + s L+rH  +H
  KWMTBOMO03238 169 YACEVCGDSFFQMSKLQRHKLKH 191
                    88******************999 PP

  == domain 4  score: 18.5 bits;  conditional E-value: 3.2e-05
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ++C+ C+k F++  +L++H  tH
  KWMTBOMO03238 197 HVCNQCNKAFNNLTSLRKHGLTH 219
                    79*****************9999 PP

  == domain 5  score: 18.9 bits;  conditional E-value: 2.4e-05
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y+C+ Cg++F++ sn+++H  +H
  KWMTBOMO03238 225 YECSTCGRRFRDGSNYRKHVDKH 247
                    99*****************9998 PP

  == domain 6  score: 12.3 bits;  conditional E-value: 0.003
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y+Cp C++ F +  +++rH  +H
  KWMTBOMO03238 265 YQCPRCPQAFQSGKDMRRHVAVH 287
                    9******************9998 PP

  == domain 7  score: 28.6 bits;  conditional E-value: 1.9e-08
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    ++C++C+++F+rk+nL+rHir  H
  KWMTBOMO03238 293 FRCKVCDRRFRRKDNLERHIRNtH 316
                    89*******************999 PP