Silkworm Genome Informatics Database

Gene

KWMTBOMO03238

Pre Gene Modal

BGIBMGA013591

Annotation

PREDICTED:_oocyte_zinc_finger_protein_XlCOF28_[Bombyx_mori]

Location

Bomo_Chr6(+):2230499-2237482 View in EpiBrowser

Transcription factor

zf-C2H2

Location in the cell

Nuclear Reliability : 4.886

CDS

ATGAGTGCAAATGTTTGTGTAAACTGTAGAAATGAAAAACCCGTAAATCTTACTACAAACCGACTGGTTACCGAGAGCTGCGGTCACGTTAAGTGTATGGACTGTCTGTTACACGAGACATCAGGTTGTGTAGCCTGTTTATCAATAGGCAACCCTGAACTTGAACAGATTGCACAAAACAACGAAACTGACGGAAACGAAGCCCAAACGAACCTACTGAATATTGAAGACGACGACGTTAACAGAGATGAATTAGTTTGTGAAGATTTAAGCAAGAAAAGGAAACCGGAGACATCACATATTAAAGTAGAGATAGATGCTAAAGGGGTCAGATGCTACATATGCACTTTGTGTGATAAAAAGTTTCATGCACGTAGTCAAGTGGCGTACCATGCATATTGCAACGGACAAAAGAAACCATTTCACTGTGATGAATGCAAGAAGAGTTTTGCGACACACTCCCATTTCAAGTATCACATGAGGGTACACCGTAACGAGCGGACGTACGCGTGTGAAGTCTGCGGCGACAGCTTCTTCCAGATGTCGAAACTGCAAAGACACAAACTGAAACACACTAAAGAGAAGAAACATGTGTGCAATCAATGCAACAAAGCGTTCAATAACTTAACATCGCTCCGGAAGCACGGCCTCACACACACCGAGGAGAGGCCCTATGAGTGCAGCACGTGCGGGAGGAGATTTCGTGACGGCTCCAACTACAGAAAACATGTCGACAAACATAATGTTGATAAAAAATATCAAAGTGGTCCGTGCGGTCCCCAGCGTCGTCCCTACCAGTGTCCGCGCTGTCCCCAGGCCTTCCAGTCGGGGAAGGACATGAGGAGACACGTCGCCGTGCACTCGGATTCGAAGCCGTTCCGGTGCAAAGTGTGCGACCGTCGATTCCGGAGGAAGGACAATCTGGAGCGCCACATCCGCAACACGCATCCCGACTACGTCACGTCGAGCGCGGTCGAGTGCGACGAGACAGCCCTGCGGCAGATCATAACTCCCACCCCTCCCGCCCCTCCCATCAACGGCGACGAGAAAACGAAACTGGAGAACATGAACCCCTTACCCCCCCTAACCGAGGAGGTCATCCAGAAGCACATGCACGGCGACACGGAGGTAGACAAGTCGTACATTCTCGTCGCGAACAACGCCCGGCAAAGCGTCATTGTCGGCCAGTGGACGGCCAAAGTGGACCGTGACACGAGCCCGCCGGTCTGCGAGTACGTGCACAAGATCAGGAGGGCCAACTCTATGGCCAGCCAGAACAACATATCGTTGCCGCCCATCGACGAGAAGAAGATGGTGGAGCTTAAAAAGAAGAGTCTCGATACCTTCGACGTGGGAGCCCCTCCGAAGGACAAGAAGAAACTGTACGAGATGATTCTCTATGACGACGGAGATAAACGGGATACCGACGACGCGAGCGCCGACAGTAACTCGGACAATTTGTGGAAGAGAAGAAAAATGAAACTGGTTTGA

Protein

MSANVCVNCRNEKPVNLTTNRLVTESCGHVKCMDCLLHETSGCVACLSIGNPELEQIAQNNETDGNEAQTNLLNIEDDDVNRDELVCEDLSKKRKPETSHIKVEIDAKGVRCYICTLCDKKFHARSQVAYHAYCNGQKKPFHCDECKKSFATHSHFKYHMRVHRNERTYACEVCGDSFFQMSKLQRHKLKHTKEKKHVCNQCNKAFNNLTSLRKHGLTHTEERPYECSTCGRRFRDGSNYRKHVDKHNVDKKYQSGPCGPQRRPYQCPRCPQAFQSGKDMRRHVAVHSDSKPFRCKVCDRRFRRKDNLERHIRNTHPDYVTSSAVECDETALRQIITPTPPAPPINGDEKTKLENMNPLPPLTEEVIQKHMHGDTEVDKSYILVANNARQSVIVGQWTAKVDRDTSPPVCEYVHKIRRANSMASQNNISLPPIDEKKMVELKKKSLDTFDVGAPPKDKKKLYEMILYDDGDKRDTDDASADSNSDNLWKRRKMKLV

Uniprot

H9JVM8 A0A2W1BK61 A0A2H1WKR9 A0A2A4J4I7 A0A194Q1Q5 A0A212FH87 + More
A0A0L7LQ02 D6WCR3 A0A0C9RPB4

Pubmed

19121390 28756777 26354079 22118469 26227816 18362917 + More
19820115

EMBL

BABH01032360 BABH01032361 KZ150071 PZC74034.1 ODYU01009332 SOQ53680.1 + More
NWSH01003045 PCG67057.1 KQ459579 KPI99481.1 AGBW02008522 OWR53094.1 JTDY01000347 KOB77593.1 KQ971311 EEZ98857.1 GBYB01009001 JAG78768.1

Proteomes

UP000005204 UP000218220 UP000053268 UP000007151 UP000037510 UP000007266 + More

PRIDE

H9JVM8

Pfam

PF00096 zf-C2H2

Interpro

IPR013087   Znf_C2H2_type        + More
IPR036236   Znf_C2H2_sf
IPR001841   Znf_RING

SUPFAM

SSF57667 SSF57667

ProteinModelPortal

H9JVM8 A0A2W1BK61 A0A2H1WKR9 A0A2A4J4I7 A0A194Q1Q5 A0A212FH87 + More
A0A0L7LQ02 D6WCR3 A0A0C9RPB4

PDB

5WJQ E-value=8.5578e-27, Score=300

KEGG

101743880 no KO assigned | (RefSeq) oocyte zinc finger protein XlCOF28

GO

GO:0003676 GO:0046872 GO:0006260 GO:0015074 GO:0003678 GO:0005634 GO:0006270 GO:0042555 GO:0048384

Length:

496

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00018

Exp number, first 60 AAs:

0.00018

Total prob of N-in:

0.03439

outside

1 - 496

Pi

176.375172

Theta

160.585254

Tajima's D

0.480608

CLR

1.632461

CSRT

0.508524573771311

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics