HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	4.6	0.2	0.82	49	2	22	124	144
2	10.5	0.6	0.011	0.67	3	23	152	172
3	10.1	0.3	0.014	0.84	5	22	181	198
4	18.0	1.1	4.5e-05	0.0027	1	23	211	233
5	14.5	0.2	0.00059	0.035	2	23	241	263
6	12.6	2.0	0.0022	0.13	1	23	271	293
7	10.9	3.4	0.0079	0.47	3	19	304	320
8	12.1	0.2	0.0033	0.2	2	23	330	351

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.82
                    EETTTTEEESSHHHHHHHHHC CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirt 22 
                    +C  C+ +F +   L +Hi+t
  KWMTBOMO03102 124 VCFACKLKFDTIQKLSQHIST 144
                    7999**************986 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.011
                    ETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   3 CpdCgksFkrksnLkrHirtH 23 
                    C  C+  F +k  L++H+ tH
  KWMTBOMO03102 152 CVQCNILFDSKTKLQQHLLTH 172
                    99******************9 PP

  == domain 3  score: 10.1 bits;  conditional E-value: 0.014
                    TTTEEESSHHHHHHHHHC CS
        zf-C2H2   5 dCgksFkrksnLkrHirt 22 
                    +Cg +F++k++L+rH++t
  KWMTBOMO03102 181 ECGDTFNNKEMLMRHRQT 198
                    6999***********975 PP

  == domain 4  score: 18.0 bits;  conditional E-value: 4.5e-05
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ykC++Cg +Fk++ +L rH + H
  KWMTBOMO03102 211 YKCKECGDVFKDRFQLYRHAKEH 233
                    9*******************999 PP

  == domain 5  score: 14.5 bits;  conditional E-value: 0.00059
                    EETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirt.H 23 
                    +C++Cg +F  ++ L +H++  H
  KWMTBOMO03102 241 VCDICGHTFIGSDALLKHRNEdH 263
                    6******************9988 PP

  == domain 6  score: 12.6 bits;  conditional E-value: 0.0022
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ykC++C+++ +++ ++ +H ++H
  KWMTBOMO03102 271 YKCKVCNETSTDRKEMYQHVKKH 293
                    9*********************9 PP

  == domain 7  score: 10.9 bits;  conditional E-value: 0.0079
                    ETTTTEEESSHHHHHHH CS
        zf-C2H2   3 CpdCgksFkrksnLkrH 19 
                    C+ Cg+sF ++ +L rH
  KWMTBOMO03102 304 CDSCGRSFATRASLSRH 320
                    99*************** PP

  == domain 8  score: 12.1 bits;  conditional E-value: 0.0033
                    EETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirtH 23 
                    kC +C+ +F++  +L +Hi  H
  KWMTBOMO03102 330 KCRICDAKFTSDKDLDVHILEH 351
                    7******************999 PP