Silkworm Genome Informatics Database

Gene

KWMTBOMO03102

Pre Gene Modal

BGIBMGA000834

Annotation

PREDICTED:_zinc_finger_protein_Xfin-like_[Bombyx_mori]

Location

Bomo_Chr5(+):18107411-18109855 View in EpiBrowser

Transcription factor

zf-C2H2

Location in the cell

Nuclear Reliability : 3.735

CDS

ATGGCAGCTATTAAGCTGTGCAGGGCAGCTAGAATCCACGGACAGCCACTACCAGACTCCGAGTACAACTCGGATTCGTTGTTGGAGTTTTTGAATAACACCGAAAACATTGAAGAATACCTGAATAACCTGGGAAAAGAGGATATACCATCAATAGTTAATATGCTTGATCGAAATGAGCATACAAATGACTCTGTCAAAAACATGAACAGAACTATTAAACAATGCAGCCCCAAGAAAAAAGAGAAAACGAAAAACTTGCAAATGGAGATAGATGTCTTAGATTCGGATGTCGAAATAGTTAAAGAAATAATATTGAAGGAATCGGATACAAAATTAAAAACAAATAAAAAAGATAACAATCCACTAGTATGTTTCGCATGTAAATTAAAATTTGACACTATCCAAAAACTATCACAACATATCAGCACATGTGATAGATCACAACGTAACTGTGTCCAATGCAATATACTATTTGATTCAAAGACAAAGCTGCAACAACATTTACTTACCCACAATCAACCATTTCCAGTGACTTGTGAGTGTGGTGACACATTCAACAACAAGGAGATGCTAATGAGGCATAGACAGACCTGCTATGCAGACCAGCTTCAGTCCATGGGTTGGGGATACAAGTGCAAGGAATGCGGTGATGTTTTCAAAGATCGATTCCAACTTTACAGGCATGCAAAAGAGCATGTATTGAAGTCAGATCAGAGAGTTTGTGATATATGTGGTCATACATTCATTGGATCTGATGCTTTATTGAAACACAGGAATGAGGACCATAAAAAACCTGCAAATGTGGCTTATAAATGCAAAGTATGCAACGAAACTTCAACGGATCGCAAGGAAATGTATCAGCACGTGAAAAAGCACACAGAGAGATCTGAACCCATTCGGCATCTTTGCGATTCGTGCGGTCGTAGTTTCGCTACCAGAGCGTCGTTATCCAGACACTGTTTACAACACGACAACCACAAGGCTAAGTGCCGGATTTGTGACGCAAAGTTTACGAGTGACAAGGATTTGGACGTACATATTTTGGAGCACATTGAGCTAGTGATGTGCGATCAGTGTGGTCAGAATGTGATCAATTATAAATTGAAAGATCATAAGTGTTCCTGA

Protein

MAAIKLCRAARIHGQPLPDSEYNSDSLLEFLNNTENIEEYLNNLGKEDIPSIVNMLDRNEHTNDSVKNMNRTIKQCSPKKKEKTKNLQMEIDVLDSDVEIVKEIILKESDTKLKTNKKDNNPLVCFACKLKFDTIQKLSQHISTCDRSQRNCVQCNILFDSKTKLQQHLLTHNQPFPVTCECGDTFNNKEMLMRHRQTCYADQLQSMGWGYKCKECGDVFKDRFQLYRHAKEHVLKSDQRVCDICGHTFIGSDALLKHRNEDHKKPANVAYKCKVCNETSTDRKEMYQHVKKHTERSEPIRHLCDSCGRSFATRASLSRHCLQHDNHKAKCRICDAKFTSDKDLDVHILEHIELVMCDQCGQNVINYKLKDHKCS

Uniprot

H9IUA4 A0A2A4JTS5 A0A2H1VH20 A0A212EHI6 A0A0N1PFK9 A0A194PNY8 + More
A0A0C9R0K2 F1MR52 A0A146NU17 D2E443 A0A146TH95 A0A3B5LM04 H9GVE0 A0A195EM66 A0A195F8L7

Pubmed

19121390 22118469 26354079 19997497 21881562

EMBL

BABH01044665 NWSH01000650 PCG75024.1 ODYU01002528 SOQ40140.1 AGBW02014879 + More
OWR40945.1 KQ460847 KPJ11972.1 KQ459597 KPI95146.1 GBYB01006456 GBYB01006457 GBYB01006458 GBYB01007803 JAG76223.1 JAG76224.1 JAG76225.1 JAG77570.1 GCES01151822 JAQ34500.1 FJ899856 ADA68116.1 GCES01094060 JAQ92262.1 AAWZ02033160 KQ978691 KYN29221.1 KQ981727 KYN36955.1

Proteomes

UP000005204 UP000218220 UP000007151 UP000053240 UP000053268 UP000261380 + More
UP000001646 UP000078492 UP000078541

PRIDE

H9IUA4

Pfam

PF07776 zf-AD + More
PF00096 zf-C2H2

Interpro

IPR012934   Znf_AD        + More
IPR013087   Znf_C2H2_type
IPR036236   Znf_C2H2_sf
IPR017114   YY-1-like
IPR003656   Znf_BED
IPR017125   Znf_PRDM5-like

SUPFAM

SSF57667 SSF57667

ProteinModelPortal

H9IUA4 A0A2A4JTS5 A0A2H1VH20 A0A212EHI6 A0A0N1PFK9 A0A194PNY8 + More
A0A0C9R0K2 F1MR52 A0A146NU17 D2E443 A0A146TH95 A0A3B5LM04 H9GVE0 A0A195EM66 A0A195F8L7

PDB

5V3G E-value=2.24656e-14, Score=192

KEGG

101739246 no KO assigned | (RefSeq) zinc finger protein Xfin-like

GO

GO:0005634 GO:0003700 GO:0008270 GO:0003676 GO:0003677 GO:0000976 GO:0046872 GO:0015074 GO:0016020 GO:0008237 GO:0051103 GO:0006281 GO:0048384

Length:

375

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.02787

outside

1 - 375

Pi

27.483308

Theta

22.180665

Tajima's D

0.805444

CLR

1.691307

CSRT

0.610419479026049

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics