HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	16.2	0.8	0.00017	0.01	1	23	118	140
2	8.4	1.7	0.05	3	6	21	151	166
3	9.6	0.0	0.021	1.3	2	20	395	413
4	23.2	2.2	9.8e-07	5.8e-05	1	23	1164	1186
5	19.9	3.0	1.1e-05	0.00065	1	23	1192	1216
6	18.4	1.2	3.2e-05	0.0019	3	23	1605	1625
7	15.4	1.5	0.0003	0.018	1	23	1631	1655
8	13.5	2.5	0.0012	0.07	1	23	1676	1700

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 0.00017
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y Cp+C+ s+  +s L++Hir H
  KWMTBOMO02834 118 YICPYCKLSCAKPSVLQKHIRAH 140
                    89*******************99 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.05
                    TTEEESSHHHHHHHHH CS
        zf-C2H2   6 CgksFkrksnLkrHir 21 
                    Cg  Fk+ksnL +H r
  KWMTBOMO02834 151 CGFAFKTKSNLYKHCR 166
                    **************65 PP

  == domain 3  score: 9.6 bits;  conditional E-value: 0.021
                    EETTTTEEESSHHHHHHHH CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHi 20 
                     Cp+C  ++++ +nL+ H+
  KWMTBOMO02834 395 LCPVCQIMYRSADNLEIHR 413
                    5*****************7 PP

  == domain 4  score: 23.2 bits;  conditional E-value: 9.8e-07
                     EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2    1 ykCpdCgksFkrksnLkrHirtH 23  
                     y+C++Cg ++k +s+Lk+HirtH
  KWMTBOMO02834 1164 YVCSECGIRCKKPSMLKKHIRTH 1186
                     9*********************9 PP

  == domain 5  score: 19.9 bits;  conditional E-value: 1.1e-05
                     EEETTTTEEESSHHHHHHHHHC..C CS
        zf-C2H2    1 ykCpdCgksFkrksnLkrHirt..H 23  
                     y+C +C  sFk+k nL++H+++  H
  KWMTBOMO02834 1192 YTCVHCAFSFKTKGNLTKHMKSkaH 1216
                     9*******************98666 PP

  == domain 6  score: 18.4 bits;  conditional E-value: 3.2e-05
                     ETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2    3 CpdCgksFkrksnLkrHirtH 23  
                     C+ C+k+F+ +s+L+ H+++H
  KWMTBOMO02834 1605 CNFCNKTFTKPSQLRLHLNIH 1625
                     *******************99 PP

  == domain 7  score: 15.4 bits;  conditional E-value: 0.0003
                     EEETTTTEEESSHHHHHHHHHC..C CS
        zf-C2H2    1 ykCpdCgksFkrksnLkrHirt..H 23  
                     ++C++C  sF+++ +L++H r+  H
  KWMTBOMO02834 1631 FRCSICAVSFRTRGHLQKHERSasH 1655
                     89*****************997555 PP

  == domain 8  score: 13.5 bits;  conditional E-value: 0.0012
                     EEETTTTEEESSHHHHHHHHHC..C CS
        zf-C2H2    1 ykCpdCgksFkrksnLkrHirt..H 23  
                     ++C+dC+  F+   +L +H+r+  H
  KWMTBOMO02834 1676 FRCSDCNIAFRIHGHLAKHLRSkmH 1700
                     89******************98666 PP