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| Gene | Transcription Factor Family | Full Seq Evalue | Best Domain Evalue | Domain Number | Alignment Detail |
|---|---|---|---|---|---|
| KWMTBOMO16491 | zf-NF-X1 | 4.2e-09 | 8e-06 | 15 | + View |
HMM length of domain: 19 aa
c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified.
Domain annotation for each sequence:
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to
-- ----- ---- -------- -------- ------- ------ ------- ------
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 -4.1 1.4 3 1.7e+04 6 10 10 14
2 22.5 13.7 1.5e-08 8.4e-05 1 19 20 38
3 -3.9 1.6 2.7 1.5e+04 8 11 43 46
4 14.8 13.1 3.8e-06 0.021 1 18 75 92
5 16.4 12.0 1.2e-06 0.0066 1 19 134 156
6 -2.0 1.0 0.65 3.7e+03 6 10 186 190
7 3.6 10.1 0.012 66 1 11 196 206
8 -0.5 0.8 0.22 1.3e+03 3 10 210 217
9 11.9 16.0 3e-05 0.17 1 19 217 241
10 -4.5 3.7 3 1.7e+04 14 18 269 274
11 4.9 12.7 0.0045 26 1 18 280 296
12 -1.0 1.1 0.32 1.8e+03 8 13 302 307
13 25.7 13.0 1.4e-09 8e-06 1 18 333 356
14 6.3 7.4 0.0017 9.6 1 13 363 374
15 -4.2 0.8 3 1.7e+04 15 19 383 390
Alignments for each domain:
== domain 1 score: -4.1 bits; conditional E-value: 3
zf-NF-X1 6 CeklC 10
C ++C
KWMTBOMO16491 10 CGRPC 14
44444 PP
== domain 2 score: 22.5 bits; conditional E-value: 1.5e-08
zf-NF-X1 1 CGnHtCeklCHeGpCppCk 19
CG H+C+k CHeGpC+ C+
KWMTBOMO16491 20 CGVHKCMKECHEGPCEDCT 38
******************5 PP
== domain 3 score: -3.9 bits; conditional E-value: 2.7
zf-NF-X1 8 klCH 11
++CH
KWMTBOMO16491 43 QVCH 46
79*9 PP
== domain 4 score: 14.8 bits; conditional E-value: 3.8e-06
zf-NF-X1 1 CGnHtCeklCHeGpCppC 18
CG H C+++CHe pCp+C
KWMTBOMO16491 75 CGAHVCRSTCHEPPCPSC 92
****************** PP
== domain 5 score: 16.4 bits; conditional E-value: 1.2e-06
zf-NF-X1 1 CG....nHtCeklCHeGpCppCk 19
CG +H C+ CHeGpCp+C+
KWMTBOMO16491 134 CGpagdKHFCKLDCHEGPCPVCP 156
899999****************7 PP
== domain 6 score: -2.0 bits; conditional E-value: 0.65
zf-NF-X1 6 CeklC 10
C+k+C
KWMTBOMO16491 186 CQKKC 190
***** PP
== domain 7 score: 3.6 bits; conditional E-value: 0.012
zf-NF-X1 1 CGnHtCeklCH 11
CG+H+C++ C+
KWMTBOMO16491 196 CGRHRCRACCC 206
**********8 PP
== domain 8 score: -0.5 bits; conditional E-value: 0.22
zf-NF-X1 3 nHtCeklC 10
+H+C +C
KWMTBOMO16491 210 QHRCGLVC 217
6***9999 PP
== domain 9 score: 11.9 bits; conditional E-value: 3e-05
zf-NF-X1 1 CG......nHtCeklCHeGpCppCk 19
CG H+C+ CH G C pC+
KWMTBOMO16491 217 CGrslacqTHRCQDFCHTGHCAPCP 241
557777779***************7 PP
== domain 10 score: -4.5 bits; conditional E-value: 3
zf-NF-X1 14 pCp.pC 18
pC pC
KWMTBOMO16491 269 PCSaPC 274
443344 PP
== domain 11 score: 4.9 bits; conditional E-value: 0.0045
zf-NF-X1 1 CGnHtCeklCHeGpCppC 18
CG H CH G+CppC
KWMTBOMO16491 280 CG-HEPLHSCHTGDCPPC 296
55.555567********* PP
== domain 12 score: -1.0 bits; conditional E-value: 0.32
zf-NF-X1 8 klCHeG 13
++CH G
KWMTBOMO16491 302 RTCHGG 307
89**88 PP
== domain 13 score: 25.7 bits; conditional E-value: 1.4e-09
zf-NF-X1 1 CGnHtCeklCHeGpC......ppC 18
CG+HtC+k+CH+GpC +pC
KWMTBOMO16491 333 CGKHTCIKVCHKGPCdagkctQPC 356
***************776655566 PP
== domain 14 score: 6.3 bits; conditional E-value: 0.0017
zf-NF-X1 1 CGnHtCeklCHeG 13
CG H C + CH+G
KWMTBOMO16491 363 CG-HPCGAACHSG 374
**.*********9 PP
== domain 15 score: -4.2 bits; conditional E-value: 3
zf-NF-X1 15 Cp...pCk 19
Cp pC+
KWMTBOMO16491 383 CPsaaPCR 390
76556885 PP
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