HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	2.3	0.7	4.3	2.6e+02	11	23	211	224
2	2.4	1.3	4.1	2.4e+02	3	23	226	251
3	12.8	5.6	0.002	0.12	1	19	287	305
4	11.4	1.9	0.0056	0.33	1	23	343	365
5	20.6	2.1	6.5e-06	0.00039	1	23	373	395
6	17.9	0.9	4.9e-05	0.003	1	23	404	427
7	14.4	0.2	0.0006	0.036	1	23	433	455
8	26.5	1.7	9.1e-08	5.4e-06	1	23	461	483
9	13.4	1.1	0.0013	0.076	1	23	488	510
10	22.1	4.3	2.2e-06	0.00013	1	23	516	538
11	15.0	2.9	0.00039	0.023	2	23	545	567

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 4.3
                    SSHHHHHHHHHC.C CS
        zf-C2H2  11 krksnLkrHirt.H 23 
                     ++s+L+ H+ + H
  KWMTBOMO02738 211 QTWSMLQYHYAKvH 224
                    58********9997 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 4.1
                    ET.....TTTEEESSHHHHHHHHHCC CS
        zf-C2H2   3 Cp.....dCgksFkrksnLkrHirtH 23 
                    C+      Cg   k+ks L +H++ H
  KWMTBOMO02738 226 CKpvvycLCGLEIKSKSVLYKHLSDH 251
                    66666668***************988 PP

  == domain 3  score: 12.8 bits;  conditional E-value: 0.002
                    EEETTTTEEESSHHHHHHH CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrH 19 
                    ++C dC+k+++++++Lk+H
  KWMTBOMO02738 287 FTCVDCHKKCSSWYSLKSH 305
                    89***************** PP

  == domain 4  score: 11.4 bits;  conditional E-value: 0.0056
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    + C++C++  k+ s +++H  +H
  KWMTBOMO02738 343 FSCDKCPRITKTLSAMNKHKFKH 365
                    89*****************9998 PP

  == domain 5  score: 20.6 bits;  conditional E-value: 6.5e-06
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y+C+ C k+Fk+k+ Lk+H r+H
  KWMTBOMO02738 373 YPCSSCEKTFKTKETLKSHERSH 395
                    99********************9 PP

  == domain 6  score: 17.9 bits;  conditional E-value: 4.9e-05
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    + C++C+++F+++s+ ++H r+ H
  KWMTBOMO02738 404 FNCEVCNMKFTTRSSVVSHKRVvH 427
                    89*******************999 PP

  == domain 7  score: 14.4 bits;  conditional E-value: 0.0006
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y+C+ Cg+ + ++ +L++H+ +H
  KWMTBOMO02738 433 YVCDLCGYACGTNGELRQHRAIH 455
                    99******************998 PP

  == domain 8  score: 26.5 bits;  conditional E-value: 9.1e-08
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ++C++C+k+Fk+ snLk+H+ +H
  KWMTBOMO02738 461 FVCDKCDKTFKTYSNLKTHMDIH 483
                    89******************998 PP

  == domain 9  score: 13.4 bits;  conditional E-value: 0.0013
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y+C +C ++ +++  L++H+ +H
  KWMTBOMO02738 488 YECFICRRVLNSRRTLRKHLLVH 510
                    99******************999 PP

  == domain 10  score: 22.1 bits;  conditional E-value: 2.2e-06
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ++C++C+k Fkr+  Lk+H+ tH
  KWMTBOMO02738 516 HVCSYCNKAFKRRQTLKVHMYTH 538
                    79*******************99 PP

  == domain 11  score: 15.0 bits;  conditional E-value: 0.00039
                    EETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirt.H 23 
                    +C+ C+++F   s L++H+++ H
  KWMTBOMO02738 545 TCKLCDERFAYASTLRSHRMRcH 567
                    8*******************999 PP