Silkworm Genome Informatics Database

Found: 1 items

Gene	Transcription Factor Family	Full Seq Evalue	Best Domain Evalue	Domain Number	Alignment Detail
KWMTBOMO02736	CP2	2.4e-55	3.6e-55	1	+ View
HMM length of domain: 229 aa c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs. i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. Domain annotation for each sequence: # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to -- ----- ---- -------- -------- ------- ------ ------- ------ --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 186.7 0.2 6.4e-59 3.6e-55 33 227 358 546 Alignments for each domain: == domain 1 score: 186.7 bits; conditional E-value: 6.4e-59 CP2 33 frfevtLeaptamakkvneepltYLNkGQaYsislkdlgaaklselkgkklksvirvvFeeekqrkkeaklwklWkegrgseavrvvdiplsggve 128 f++ Le++ + ++ +++ +tY+NkGQ+Y i+l+++++ + + k++++ksv++++F+eek ++ e k w++W+ +++s ++r++d ++++ KWMTBOMO02736 358 YGFKYHLETASSSSQRREDDRITYINKGQFYGITLEYIHDPDKPL-KNQTVKSVVMLMFREEKSPEDEIKAWQFWHGRQHSVKQRILD----ADTK 448 679**********************************777776.999***********************************....6888 PP CP2 129 eqkntqvelesssfdaveftWngeee.akifvrvNclStdFsksKGvkGvPlrlqieTelisesvkesalevafckvKlFrdkGAeRKlkndvakv 223 ++ +e+ + +a+ + Wn+ e aki + v clStdFs++KGvkG+Pl++qi+T +++ ++ +c++K+F+dkGAeRK+++++++ KWMTBOMO02736 449 NSIGLAGCIEEVAHNAIAVYWNPLESaAKINIAVQCLSTDFSSQKGVKGLPLHIQIDTFEDPRDTQV--YHRGYCQIKVFCDKGAERKTRDEERRA 542 88888999**********988769**************************876655554..6***********************9 PP CP2 224 kkki 227 k++ KWMTBOMO02736 543 AKRK 546 9986 PP

Gene

Transcription Factor Family

Full Seq Evalue

Best Domain Evalue

Domain Number

Alignment Detail

KWMTBOMO02736

CP2

2.4e-55

3.6e-55

+ View

						  HMM length of domain: 229 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	186.7	0.2	6.4e-59	3.6e-55	33	227	358	546

  Alignments for each domain:
  == domain 1  score: 186.7 bits;  conditional E-value: 6.4e-59
            CP2  33 frfevtLeaptamakkvneepltYLNkGQaYsislkdlgaaklselkgkklksvirvvFeeekqrkkeaklwklWkegrgseavrvvdiplsggve 128
                      f++ Le++ +  ++ +++ +tY+NkGQ+Y i+l+++++ + +  k++++ksv++++F+eek ++ e k w++W+ +++s ++r++d    ++++
  KWMTBOMO02736 358 YGFKYHLETASSSSQRREDDRITYINKGQFYGITLEYIHDPDKPL-KNQTVKSVVMLMFREEKSPEDEIKAWQFWHGRQHSVKQRILD----ADTK 448
                    679************************************777776.999***************************************....6888 PP

            CP2 129 eqkntqvelesssfdaveftWngeee.akifvrvNclStdFsksKGvkGvPlrlqieTelisesvkesalevafckvKlFrdkGAeRKlkndvakv 223
                    ++      +e+ + +a+ + Wn+ e  aki + v clStdFs++KGvkG+Pl++qi+T     +++    ++ +c++K+F+dkGAeRK+++++++ 
  KWMTBOMO02736 449 NSIGLAGCIEEVAHNAIAVYWNPLESaAKINIAVQCLSTDFSSQKGVKGLPLHIQIDTFEDPRDTQV--YHRGYCQIKVFCDKGAERKTRDEERRA 542
                    88888999**************988769******************************876655554..6*************************9 PP

            CP2 224 kkki 227
                     k++
  KWMTBOMO02736 543 AKRK 546
                    9986 PP