HMM length of domain: 57 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	29.0	3.5	3.4e-09	6.5e-07	2	57	232	298
2	32.2	1.9	3.3e-10	6.3e-08	2	57	547	613

  Alignments for each domain:
  == domain 1  score: 29.0 bits;  conditional E-value: 3.4e-09
                    T-SSSS-HH.HHHHHHHHHHHSSS-SHHHHHHHHHHH..........TS-HHHHHHHHHHHHHHHHH CS
       Homeobox   2 rkRttftke.qleeLeelFeenrypsaeereeLAkkl..........gLeerqVkvWFqNrRakekk 57 
                    r Rt+f +e +l  L++ F+en++ps++++++  ++l           L+ ++V +WF+N Ra +k+
  KWMTBOMO02574 232 RMRTSFDPElELPKLQRWFAENQHPSRQQIQQYVRELnnlesrrgrkPLDVNNVVYWFKNARAAQKR 298
                    7899999876899*********************************99****************997 PP

  == domain 2  score: 32.2 bits;  conditional E-value: 3.3e-10
                    T-SSSS-H.HHHHHHHHHHHHSSS-SHHHHHHHHHHH..........TS-HHHHHHHHHHHHHHHHH CS
       Homeobox   2 rkRttftk.eqleeLeelFeenrypsaeereeLAkkl..........gLeerqVkvWFqNrRakekk 57 
                    r+Rt + + +++ +Le+ F +n +ps++ + + +++l          +Le ++V++WF+NrRak k+
  KWMTBOMO02574 547 RNRTFIDPvSEVPVLEQWFSMNTHPSHNLILKYTEELnrmpyrqkfpRLESKNVQFWFKNRRAKCKR 613
                    55555554356789***************************************************97 PP