HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	20.1	1.4	9.6e-06	0.00057	2	23	149	170
2	22.2	1.9	2.1e-06	0.00012	2	23	178	199
3	13.6	0.4	0.0011	0.068	1	23	205	227
4	21.8	1.9	2.7e-06	0.00016	1	23	233	255
5	25.0	0.1	2.8e-07	1.6e-05	1	23	261	283
6	19.4	1.2	1.6e-05	0.00093	3	23	291	311
7	20.5	2.3	7.2e-06	0.00043	1	23	317	339
8	12.9	1.8	0.0019	0.11	1	23	345	367
9	16.6	3.5	0.00013	0.0076	1	23	373	395

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 9.6e-06
                    EETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirtH 23 
                    kCp+C k+F   +n+++H+r H
  KWMTBOMO02473 149 KCPKCEKTFQKYENFEAHMRNH 170
                    8*******************99 PP

  == domain 2  score: 22.2 bits;  conditional E-value: 2.1e-06
                    EETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirtH 23 
                    kC+ C k+F++  nL +HirtH
  KWMTBOMO02473 178 KCEQCEKTFPNLRNLHSHIRTH 199
                    8********************9 PP

  == domain 3  score: 13.6 bits;  conditional E-value: 0.0011
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y+C  Cgk F     Lk+H  tH
  KWMTBOMO02473 205 YQCLTCGKNFAYLNVLKNHELTH 227
                    9*******************999 PP

  == domain 4  score: 21.8 bits;  conditional E-value: 2.7e-06
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y+C++C+ +F +++nLk+H+ tH
  KWMTBOMO02473 233 YVCHICNAKFIQRYNLKTHLDTH 255
                    9********************99 PP

  == domain 5  score: 25.0 bits;  conditional E-value: 2.8e-07
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y C+ Cgk+F+++ nLk H+ +H
  KWMTBOMO02473 261 YICGQCGKRFSQPGNLKIHLIRH 283
                    89*******************99 PP

  == domain 6  score: 19.4 bits;  conditional E-value: 1.6e-05
                    ETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   3 CpdCgksFkrksnLkrHirtH 23 
                    C  C+++F  ks+L +H+r+H
  KWMTBOMO02473 291 CQLCDMRFYVKSDLFKHMRSH 311
                    9*******************9 PP

  == domain 7  score: 20.5 bits;  conditional E-value: 7.2e-06
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    + C++C+k+Fk+ks   +H+r+H
  KWMTBOMO02473 317 FSCEYCDKTFKSKSFQIVHLRSH 339
                    89********************9 PP

  == domain 8  score: 12.9 bits;  conditional E-value: 0.0019
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y C+ C+k+F ++ ++++H+++H
  KWMTBOMO02473 345 YACDFCPKRFMSRKDMRNHRMIH 367
                    88******************999 PP

  == domain 9  score: 16.6 bits;  conditional E-value: 0.00013
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    +kC  C++ F +k  L+rH+++H
  KWMTBOMO02473 373 HKCALCNQAFIQKCALNRHMKSH 395
                    79********************9 PP