Silkworm Genome Informatics Database

Gene

KWMTBOMO02473

Pre Gene Modal

BGIBMGA002571

Annotation

PREDICTED:_gastrula_zinc_finger_protein_XlCGF52.1-like_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr5(+):2911623-2917492 View in EpiBrowser

Transcription factor

zf-C2H2

Location in the cell

Nuclear Reliability : 4.052

CDS

ATGGCTGTTAATTTAGATTTAAATAAAATTTGCCGAACATGCCTAACAGATACTGTTCCTTTAAAGGACTTGTTTTCAGTCTGTTCACCAGAAATTTTTAAGTATTGCACTTCAGTTGAGATTTCAGATGATGATAAACTACCCAGGAAAGTCTGTGAGATGTGTGTTGCATTATTGCAAAAGTTGTATCAGTTCAAACAAATAGCAGTTAAGTCAAATACGGTGTTACAACATCACATTGAAGCTACGAAGAGGATAAAACTAGAACATGGATTCGCAGACAGCGAAATAGAAATGCCTATAGCTATACTGACCGAAGAGACACAATTCACACAATCTATAAATAACAGTTGTCCTGAATTGCACAACATACCCATCCAGGAAGAAAATCAAATAAGGAAAAGAAGAAGGAAATCCGAGCCGAAAAAGAAAAAAGTCCGTATGAAATGCCCAAAATGCGAGAAAACATTCCAAAAATACGAAAATTTCGAAGCCCATATGAGAAATCATTTTGGCAAGAAACCCGACATAAAGTGTGAGCAGTGTGAGAAGACATTTCCGAATTTAAGAAACTTACATAGTCACATTAGGACTCACACTGGTGTTAGAAAATATCAATGCTTGACTTGTGGAAAGAACTTTGCCTACCTCAATGTGTTGAAAAATCATGAATTAACACACAGCGGAGTCAAGAAATATGTTTGTCATATATGCAATGCTAAGTTTATTCAGAGATATAACTTGAAGACTCATCTAGATACACACACGAACCAGAAAAAGTATATCTGCGGTCAATGTGGCAAGAGATTCTCGCAGCCGGGCAATCTGAAGATCCATCTAATACGGCATACAGGGATTAAGAATGTTGCTTGCCAACTATGTGATATGAGATTTTATGTTAAAAGCGACTTATTCAAGCACATGCGGTCGCACTCGTCCGACAAGCCGTTCTCGTGTGAATACTGCGACAAAACTTTTAAGAGCAAAAGCTTCCAAATTGTACATCTACGTTCGCATACAGGCGAGAGACCATACGCGTGCGATTTCTGCCCTAAGAGGTTCATGTCGCGCAAGGACATGAGGAACCATCGCATGATCCACACCGGGGAGCGACCCCACAAGTGCGCGCTCTGCAACCAAGCGTTCATACAGAAGTGTGCGTTGAATCGCCACATGAAAAGTCACGAGAAAGACGGGCCGGTGATGAACGCCATCCAAGGGATCGAGCAGTCGGCCGTGGCGGTCTCCTACGCGGCCTGGGATGATGTGTGA

Protein

MAVNLDLNKICRTCLTDTVPLKDLFSVCSPEIFKYCTSVEISDDDKLPRKVCEMCVALLQKLYQFKQIAVKSNTVLQHHIEATKRIKLEHGFADSEIEMPIAILTEETQFTQSINNSCPELHNIPIQEENQIRKRRRKSEPKKKKVRMKCPKCEKTFQKYENFEAHMRNHFGKKPDIKCEQCEKTFPNLRNLHSHIRTHTGVRKYQCLTCGKNFAYLNVLKNHELTHSGVKKYVCHICNAKFIQRYNLKTHLDTHTNQKKYICGQCGKRFSQPGNLKIHLIRHTGIKNVACQLCDMRFYVKSDLFKHMRSHSSDKPFSCEYCDKTFKSKSFQIVHLRSHTGERPYACDFCPKRFMSRKDMRNHRMIHTGERPHKCALCNQAFIQKCALNRHMKSHEKDGPVMNAIQGIEQSAVAVSYAAWDDV

Uniprot

H9IZ86 A0A2A4J0T1 A0A1E1W558 A0A194Q5H0 A0A194QV77 A0A2H1WF96 + More
A0A212ERC5 B0W724

Pubmed

19121390 26354079 22118469

EMBL

BABH01014532 BABH01014533 NWSH01004519 PCG65022.1 GDQN01008960 JAT82094.1 + More
KQ459465 KPJ00255.1 KQ461103 KPJ09438.1 ODYU01008294 SOQ51749.1 AGBW02013039 OWR44053.1 DS231851 EDS37298.1

Proteomes

UP000005204 UP000218220 UP000053268 UP000053240 UP000007151 UP000002320 + More

PRIDE

H9IZ86

Pfam

PF00096 zf-C2H2 + More
PF07776 zf-AD

Interpro

IPR036236   Znf_C2H2_sf        + More
IPR013087   Znf_C2H2_type
IPR012934   Znf_AD

SUPFAM

SSF57667 SSF57667

ProteinModelPortal

H9IZ86 A0A2A4J0T1 A0A1E1W558 A0A194Q5H0 A0A194QV77 A0A2H1WF96 + More
A0A212ERC5 B0W724

PDB

5WJQ E-value=1.37182e-38, Score=401

KEGG

101744816 no KO assigned | (RefSeq) gastrula zinc finger protein XlCGF52.1-like

GO

GO:0003676 GO:0005634 GO:0008270 GO:0046872 GO:0005737 GO:0008152 GO:0016301 GO:0016773 GO:0006281 GO:0048384

Length:

423

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00145

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00540

outside

1 - 423

Pi

70.70349

Theta

144.549493

Tajima's D

-1.307188

CLR

13.73859

CSRT

0.0865456727163642

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics