Gene | Transcription Factor Family | Full Seq Evalue | Best Domain Evalue | Domain Number | Alignment Detail |
---|---|---|---|---|---|
KWMTBOMO02424 | HMG | 0.00016 | 0.00016 | 2 | + View |
HMM length of domain: 69 aa c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs. i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. Domain annotation for each sequence: # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to -- ----- ---- -------- -------- ------- ------ ------- ------ --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 -2.5 0.1 9.7 6.8e+03 24 38 92 106 2 21.9 0.3 2.3e-07 0.00016 2 43 162 203 Alignments for each domain: == domain 1 score: -2.5 bits; conditional E-value: 9.7 TTS-HHHHHHHHHHH CS HMG 24 Pelknaeiskklgek 38 P+++ a+is+ +++ KWMTBOMO02424 92 PKITRAQISQAKEKM 106 777778888765555 PP == domain 2 score: 21.9 bits; conditional E-value: 2.3e-07 -SS--HHHHHHHHHHHHHHHHSTTS-HHHHHHHHHHHHHCSH CS HMG 2 kRplsafflfskeqraklkaenPelknaeiskklgekWkals 43 kR af f + + + lkaenP+l+ ++++ l ++W++ + KWMTBOMO02424 162 KRLKAAFTAFEQINLPRLKAENPSLRLSQLKELLKKEWHKSP 203 67788*********************************9865 PP |
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