Silkworm Genome Informatics Database

Gene

KWMTBOMO01954

Pre Gene Modal

BGIBMGA006230

Annotation

putative_zinc_finger_protein_SLUG_[Operophtera_brumata]

Location

Bomo_Chr4(+):8611438-8613202 View in EpiBrowser

Transcription factor

zf-C2H2

Location in the cell

Nuclear Reliability : 3.582

CDS

ATGCTTGTAGAGGACTCTCAAAATCGTTCAGTGCTGGCGAAGAACTATGCGCACTGTCCGCTGAAGAAGCGACCGGTGTTGGTGCGGGAGGAGCGGCCTGCGACGCCGCCCACTACGCCGCCTCATCCCGCCCACCTTGCCACGAGACTTTATTATGATTATCATTGTGACATGGAAAATGAAGAACCTGAGAATCTTAGCACTAAGCCCGAAGACCTGTCCAAGACAGGAAACTATCCGAGCAAAGCTTCGTCGCCAGTTTCAGCGATGACGGTTAAGGTTGAACCAAGAGAATGGTCTCACCAGCTGCCCGACTATATGTCAGCTTGCCGAACTCGCCTCGAGCCGGCACCAACAGAGCTTGCACGACCTACGCCGCAGTACCCTTACATGCCGACATTGTATTCGCCCTACGCATTTGAAGAATTATACCCAGCGGCACCTGCTCTGTCCCCTCCGATACACCCGCAATTGTATACGCGTTACTCACCCGCATCACCGCCGTCCTCGTGTTCACCTCCACCTTGCCCCGAAGATCTAAGATCACCCGGTTCCGTTTCTTCCGACTCGGGAGTTTCCGTTTCGGGAACACGTCGTCCTCGGTATCAATGTTCAGACTGCGCAAAGTCTTATTCGACGTATTCCGGTCTCTCGAAACATCAGAAATTTCACTGTGCTGCTGCGGAAGGTAGTCTAGCAAGGAAGTCTTTCAGCTGCAAATATTGTGCAAAGGTTTACACTTCTCTTGGTGCACTTAAAATGCACATCCGCACGCATACGCTACCCTGTAAATGCCATTTATGCGGTAAAGCCTTTTCAAGACCCTGGCTTCTTCAGGGTCACATCAGAACGCACACCGGTGAGAAACCATTCTCTTGCCACCACTGCAGGCGCGCATTTGCCGATAGATCGAATCTTCGCGCTCACCTTCAGACCCATTCGGATGTGAAAAAATATTCGTGCTCTGGTTGTGGTAAAACCTTTTCACGTATGTCCCTTCTGAGTAAACATCTGGAAGGCGGATGTGGAGTACCAGGCAGCACGCCTTACGAGTATCGTCCTGAAGCAATGCAAGTTGCGCATGCGCACCCAAACCTCCCACCGCCCGCTACCGTGCACGCCTATTAA

Protein

MLVEDSQNRSVLAKNYAHCPLKKRPVLVREERPATPPTTPPHPAHLATRLYYDYHCDMENEEPENLSTKPEDLSKTGNYPSKASSPVSAMTVKVEPREWSHQLPDYMSACRTRLEPAPTELARPTPQYPYMPTLYSPYAFEELYPAAPALSPPIHPQLYTRYSPASPPSSCSPPPCPEDLRSPGSVSSDSGVSVSGTRRPRYQCSDCAKSYSTYSGLSKHQKFHCAAAEGSLARKSFSCKYCAKVYTSLGALKMHIRTHTLPCKCHLCGKAFSRPWLLQGHIRTHTGEKPFSCHHCRRAFADRSNLRAHLQTHSDVKKYSCSGCGKTFSRMSLLSKHLEGGCGVPGSTPYEYRPEAMQVAHAHPNLPPPATVHAY

Uniprot

H9J9N7 A0A2A4K3E5 A0A0L7LET7 A0A2H1WZI9 A0A194PK71 A0A194RC24 + More
A0A1S3DBT4 A0A146M9Q2 N6T6F5

Pubmed

19121390 26227816 26354079 26823975 23537049

EMBL

BABH01005100 NWSH01000172 PCG78775.1 JTDY01001395 KOB73982.1 ODYU01012259 + More
SOQ58471.1 KQ459601 KPI93836.1 KQ460398 KPJ15152.1 GDHC01002155 JAQ16474.1 APGK01041964 KB740999 KB632316 ENN75804.1 ERL92252.1

Proteomes

UP000005204 UP000218220 UP000037510 UP000053268 UP000053240 UP000079169 + More
UP000019118 UP000030742

PRIDE

H9J9N7

Pfam

PF00096 zf-C2H2

Interpro

IPR013087 Znf_C2H2_type + More
IPR036236 Znf_C2H2_sf

SUPFAM

SSF57667 SSF57667

ProteinModelPortal

H9J9N7 A0A2A4K3E5 A0A0L7LET7 A0A2H1WZI9 A0A194PK71 A0A194RC24 + More
A0A1S3DBT4 A0A146M9Q2 N6T6F5

PDB

3W5K E-value=2.26327e-46, Score=468

KEGG

101744234 K05706 snail 2 | (RefSeq) zinc finger protein SNAI2-like

GO

GO:0003676 GO:0046872 GO:0030833 GO:0006480 GO:0008168 GO:0005737 GO:0016876 GO:0043039 GO:0004651 GO:0005634

Length:

375

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00014

Exp number, first 60 AAs:

0

Total prob of N-in:

0.01479

outside

1 - 375

Pi

57.308383

Theta

225.840106

Tajima's D

-2.124795

CLR

12.350464

CSRT

0.00809959502024899

Interpretation

Possibly Positive selection

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics