HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	19.5	0.3	1.5e-05	0.00088	1	23	9	31
2	18.1	3.3	4.1e-05	0.0024	1	23	38	60
3	24.3	2.2	4.3e-07	2.6e-05	1	23	66	88
4	17.7	1.6	5.5e-05	0.0033	1	23	94	116
5	21.4	3.8	3.6e-06	0.00022	1	23	122	144
6	16.6	1.3	0.00012	0.0074	1	23	150	174
7	6.8	2.0	0.16	9.7	1	23	180	202
8	17.6	0.6	6.2e-05	0.0037	1	23	208	231

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 1.5e-05
                   EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2  1 ykCpdCgksFkrksnLkrHirtH 23
                   ++C++Cg + +++s L++H r+H
  KWMTBOMO02132  9 HQCGECGLTLSTRSALTAHARSH 31
                   79********************9 PP

  == domain 2  score: 18.1 bits;  conditional E-value: 4.1e-05
                   EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2  1 ykCpdCgksFkrksnLkrHirtH 23
                   ++C++C+k+F  +  L+rH+rtH
  KWMTBOMO02132 38 HRCDVCHKTFAVPARLVRHYRTH 60
                   79********************9 PP

  == domain 3  score: 24.3 bits;  conditional E-value: 4.3e-07
                   EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2  1 ykCpdCgksFkrksnLkrHirtH 23
                   ++C++C+k+F+ k+nL++H+r+H
  KWMTBOMO02132 66 FECEYCHKMFSVKENLQVHRRIH 88
                   89********************9 PP

  == domain 4  score: 17.7 bits;  conditional E-value: 5.5e-05
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y+C++C+  F ++  L rH r+H
  KWMTBOMO02132  94 YRCNVCDAAFEHSGKLHRHARIH 116
                    9********************99 PP

  == domain 5  score: 21.4 bits;  conditional E-value: 3.6e-06
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    + Cp+C+k+F ++ +L+ H+rtH
  KWMTBOMO02132 122 HACPHCHKTFIQSGQLVIHLRTH 144
                    56********************9 PP

  == domain 6  score: 16.6 bits;  conditional E-value: 0.00012
                    EEET..TTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCp..dCgksFkrksnLkrHirtH 23 
                    y+Cp  +Cgk F+ + +Lk+H rtH
  KWMTBOMO02132 150 YRCPapGCGKGFTCSKQLKVHSRTH 174
                    9***********************9 PP

  == domain 7  score: 6.8 bits;  conditional E-value: 0.16
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y+C++C + F  ++ Lk H+  H
  KWMTBOMO02132 180 YTCEICLRDFGYNHVLKLHRFQH 202
                    9******************9877 PP

  == domain 8  score: 17.6 bits;  conditional E-value: 6.2e-05
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    y+C++C+ +F++k ++++Hi + H
  KWMTBOMO02132 208 YRCTVCDGTFNTKKQMEAHIYKeH 231
                    9*******************9988 PP