HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	2.4	0.2	3.9	2.3e+02	1	23	288	310
2	10.7	1.9	0.0091	0.54	2	23	428	450
3	12.0	0.1	0.0036	0.22	1	23	456	478
4	10.5	0.3	0.011	0.64	1	23	486	509
5	22.1	2.9	2.3e-06	0.00014	1	23	514	536
6	20.7	0.2	6e-06	0.00036	1	23	542	564
7	17.1	2.4	8.7e-05	0.0052	1	23	570	592
8	24.8	0.6	3.1e-07	1.8e-05	1	23	598	620
9	10.2	3.6	0.013	0.79	1	23	626	648
10	3.4	0.1	1.9	1.1e+02	1	21	654	674
11	16.1	7.1	0.00018	0.011	1	23	682	704
12	20.5	5.3	7e-06	0.00042	1	23	710	733

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 3.9
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y+C  C    +++  +++H+r H
  KWMTBOMO02277 288 YQCAACLLALPNRLTFTQHQRDH 310
                    89999****************99 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.0091
                    EETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirt.H 23 
                    kC++C+k F++k +  +Hi+  H
  KWMTBOMO02277 428 KCNHCDKLFSSKQSKSVHIKAvH 450
                    8******************9877 PP

  == domain 3  score: 12.0 bits;  conditional E-value: 0.0036
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    + C++Cg +F  + +L  H  tH
  KWMTBOMO02277 456 HACGECGARFAYPRSLALHAATH 478
                    56******************999 PP

  == domain 4  score: 10.5 bits;  conditional E-value: 0.011
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    y C+ Cgk+ +++s+ + H  + H
  KWMTBOMO02277 486 YACDLCGKVLNHPSSVVYHKESeH 509
                    88*****************98877 PP

  == domain 5  score: 22.1 bits;  conditional E-value: 2.3e-06
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y+C++Cgk Fk+k +L+rH+ +H
  KWMTBOMO02277 514 YVCSKCGKNFKHKQLLQRHQLVH 536
                    9*******************999 PP

  == domain 6  score: 20.7 bits;  conditional E-value: 6e-06
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    + C++C+  Fk+k nL++H+  H
  KWMTBOMO02277 542 FICKVCNTAFKTKANLVNHQILH 564
                    78******************999 PP

  == domain 7  score: 17.1 bits;  conditional E-value: 8.7e-05
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y C++C+++F +k +L+ H+r+H
  KWMTBOMO02277 570 YACEICKQKFAHKTSLTLHLRRH 592
                    88********************9 PP

  == domain 8  score: 24.8 bits;  conditional E-value: 3.1e-07
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ++C+ CgksF++k nL  H r+H
  KWMTBOMO02277 598 FTCNTCGKSFTQKGNLSEHERIH 620
                    89*******************99 PP

  == domain 9  score: 10.2 bits;  conditional E-value: 0.013
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    +kC  C+++F+++s+ + H ++H
  KWMTBOMO02277 626 FKCALCPRRFTTSSQHRLHVQRH 648
                    8*******************999 PP

  == domain 10  score: 3.4 bits;  conditional E-value: 1.9
                    EEETTTTEEESSHHHHHHHHH CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHir 21 
                    + C+ C+k+F +  +  +H r
  KWMTBOMO02277 654 FACSSCPKRFVSGASRAAHER 674
                    78********98777777766 PP

  == domain 11  score: 16.1 bits;  conditional E-value: 0.00018
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    + Cp+C ++F+ +  L++H+r+H
  KWMTBOMO02277 682 HSCPHCERTFCERWALTKHMRRH 704
                    68********************9 PP

  == domain 12  score: 20.5 bits;  conditional E-value: 7e-06
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    ++C++C++ F + snL++H++  H
  KWMTBOMO02277 710 FRCHHCPRAFADASNLNKHRKHvH 733
                    89******************9988 PP