Silkworm Genome Informatics Database

Found: 1 items

Gene	Transcription Factor Family	Full Seq Evalue	Best Domain Evalue	Domain Number	Alignment Detail
KWMTBOMO01855	RXR-like	3.9e-50	5.5e-50	1	+ View
HMM length of domain: 202 aa c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs. i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. Domain annotation for each sequence: # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to -- ----- ---- -------- -------- ------- ------ ------- ------ --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 169.9 0.0 5.6e-53 5.5e-50 1 196 225 429 Alignments for each domain: == domain 1 score: 169.9 bits; conditional E-value: 5.6e-53 RXR-like 1 icetaarlLfllVewaksipafseLpledqviLLrasWaelliLalaqtsiplsda..............qlllasglsvarnsaek.evekildl 81 +c++ ++++ +l+ wa++ip+f +L+ +dq+ L++ sW+ell++a+a++s++ + + l+ g++++rnsa + +v +i+d KWMTBOMO01855 225 LCQIGNKQIAALIVWARDIPHFGQLEIDDQILLIKGSWNELLLFAIAWRSMEFLNDerenvdsrntappqLICLMPGMTLHRNSALQaGVGQIFD- 319 69************************************************99999********7677899*****99****. PP RXR-like 82 eevrvLqelvtklrdlqldatEyacLkaIvlfnpdtdaagleerskieslrekvqasleeyiqdqypeqpgrFgklLlrLpalrsissktieelff 177 rvL+el+ k+r+l++d++Ey LkaI+l np d +gl++++++++lrek +l+ey+++ +++grF+ lLlrLpalrsis+k e+l + KWMTBOMO01855 320 ---RVLSELSLKMRSLRMDQAEYVALKAIILLNP--DVKGLKNKQEVDVLREKMFLCLDEYCRRSRGGEEGRFAALLLRLPALRSISLKSFEHLYL 410 ...***************************..99****************************************************** PP RXR-like 178 skliGdtpietlllemles 196 + l+++ ++ + +++ l + KWMTBOMO01855 411 FHLVAEGSVSSYIRDALCN 429 *********99998865 PP

Gene

Transcription Factor Family

Full Seq Evalue

Best Domain Evalue

Domain Number

Alignment Detail

KWMTBOMO01855

RXR-like

3.9e-50

5.5e-50

+ View

						  HMM length of domain: 202 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	169.9	0.0	5.6e-53	5.5e-50	1	196	225	429

  Alignments for each domain:
  == domain 1  score: 169.9 bits;  conditional E-value: 5.6e-53
       RXR-like   1 icetaarlLfllVewaksipafseLpledqviLLrasWaelliLalaqtsiplsda..............qlllasglsvarnsaek.evekildl 81 
                    +c++ ++++ +l+ wa++ip+f +L+ +dq+ L++ sW+ell++a+a++s++   +               + l+ g++++rnsa + +v +i+d 
  KWMTBOMO01855 225 LCQIGNKQIAALIVWARDIPHFGQLEIDDQILLIKGSWNELLLFAIAWRSMEFLNDerenvdsrntappqLICLMPGMTLHRNSALQaGVGQIFD- 319
                    69**************************************************99999************7677899*********99********. PP

       RXR-like  82 eevrvLqelvtklrdlqldatEyacLkaIvlfnpdtdaagleerskieslrekvqasleeyiqdqypeqpgrFgklLlrLpalrsissktieelff 177
                       rvL+el+ k+r+l++d++Ey  LkaI+l np  d +gl++++++++lrek   +l+ey+++   +++grF+ lLlrLpalrsis+k  e+l +
  KWMTBOMO01855 320 ---RVLSELSLKMRSLRMDQAEYVALKAIILLNP--DVKGLKNKQEVDVLREKMFLCLDEYCRRSRGGEEGRFAALLLRLPALRSISLKSFEHLYL 410
                    ...*******************************..99********************************************************** PP

       RXR-like 178 skliGdtpietlllemles 196
                    + l+++ ++ + +++ l +
  KWMTBOMO01855 411 FHLVAEGSVSSYIRDALCN 429
                    ***********99998865 PP