HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	4.6	0.3	0.81	49	6	23	1269	1286
2	8.3	2.5	0.055	3.3	3	23	1297	1318
3	3.2	0.1	2.3	1.4e+02	3	23	1325	1343
4	9.0	0.1	0.031	1.9	3	23	1352	1372
5	15.2	6.6	0.00036	0.021	3	23	1409	1429
6	11.7	0.4	0.0044	0.26	1	23	1435	1457
7	17.4	0.9	6.9e-05	0.0041	1	23	1463	1485
8	7.6	6.7	0.087	5.2	1	23	1491	1514

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.81
                     TTEEESSHHHHHHHHHCC CS
        zf-C2H2    6 CgksFkrksnLkrHirtH 23  
                     C ++  +  +Lk H+r H
  KWMTBOMO10159 1269 CEECGITVKDLKEHMRQH 1286
                     666666779*******99 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.055
                     ETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2    3 CpdCgksFkrksnLkrHirt.H 23  
                     C+ C ++F++  +  +H r+ H
  KWMTBOMO10159 1297 CHLCEETFSSANSKYKHVRRkH 1318
                     ********************99 PP

  == domain 3  score: 3.2 bits;  conditional E-value: 2.3
                     ETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2    3 CpdCgksFkrksnLkrHirt.H 23  
                     C++C+k      nLk+Hi + H
  KWMTBOMO10159 1325 CKICNKAV---ANLKAHILVvH 1343
                     99999999...99999998877 PP

  == domain 4  score: 9.0 bits;  conditional E-value: 0.031
                     ETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2    3 CpdCgksFkrksnLkrHirtH 23  
                     C  Cg+ F +ks L +H+ +H
  KWMTBOMO10159 1352 CIACGRGFISKSRLDVHMAVH 1372
                     556****************99 PP

  == domain 5  score: 15.2 bits;  conditional E-value: 0.00036
                     ETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2    3 CpdCgksFkrksnLkrHirtH 23  
                     C  C+k+F  k++L++HirtH
  KWMTBOMO10159 1409 CQFCSKTFFKKYHLQVHIRTH 1429
                     9*******************9 PP

  == domain 6  score: 11.7 bits;  conditional E-value: 0.0044
                     EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2    1 ykCpdCgksFkrksnLkrHirtH 23  
                     y+C++Cgk F++k  Lk+H  +H
  KWMTBOMO10159 1435 YECNECGKWFSSKNVLKNHKLIH 1457
                     99*****************9998 PP

  == domain 7  score: 17.4 bits;  conditional E-value: 6.9e-05
                     EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2    1 ykCpdCgksFkrksnLkrHirtH 23  
                     + C+ C++sF r+  L +H+ +H
  KWMTBOMO10159 1463 FACTLCDMSFIRNGYLHAHMLSH 1485
                     78*******************99 PP

  == domain 8  score: 7.6 bits;  conditional E-value: 0.087
                     EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2    1 ykCpdCgksFkrksnLkrHirt.H 23  
                     ++C +Cg +F r+++ +rH  t H
  KWMTBOMO10159 1491 FECQYCGAKFHRSDHRRRHEHTvH 1514
                     89*****************99988 PP