HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	20.5	1.2	7.2e-06	0.00043	1	23	576	599
2	10.9	0.7	0.0078	0.47	1	23	605	627
3	23.8	1.4	6.4e-07	3.8e-05	1	23	633	655
4	17.1	4.4	8.9e-05	0.0053	1	23	661	683
5	23.4	2.2	8.8e-07	5.3e-05	1	23	689	711
6	17.9	0.4	4.7e-05	0.0028	1	23	717	740

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 7.2e-06
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    y C +C k+F++++ L++H r+ H
  KWMTBOMO01737 576 YSCVKCEKMFSTPHGLEVHARRsH 599
                    89********************99 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.0078
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    + C+ C+k+F +  +L +H+  H
  KWMTBOMO01737 605 FACEQCSKTFGHEISLSQHRALH 627
                    78******************998 PP

  == domain 3  score: 23.8 bits;  conditional E-value: 6.4e-07
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ++C+ Cgk+Fkr+s L +H+ +H
  KWMTBOMO01737 633 FECKQCGKTFKRSSTLSTHLLIH 655
                    89******************999 PP

  == domain 4  score: 17.1 bits;  conditional E-value: 8.9e-05
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y+C +Cgk+F +ks++k+H  +H
  KWMTBOMO01737 661 YPCQYCGKRFHQKSDMKKHTYIH 683
                    99*****************9888 PP

  == domain 5  score: 23.4 bits;  conditional E-value: 8.8e-07
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    +kC +Cgk F+++snL +H r+H
  KWMTBOMO01737 689 HKCQVCGKAFSQSSNLITHSRKH 711
                    79********************9 PP

  == domain 6  score: 17.9 bits;  conditional E-value: 4.7e-05
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    + C+ Cg+ F rk +L+rH  t H
  KWMTBOMO01737 717 FACELCGRAFQRKVDLRRHKETqH 740
                    78*****************99988 PP