Gene | Transcription Factor Family | Full Seq Evalue | Best Domain Evalue | Domain Number | Alignment Detail |
---|---|---|---|---|---|
KWMTBOMO14794 | PLU-1 | 0.0038 | 0.0058 | 2 | + View |
HMM length of domain: 334 aa c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs. i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. Domain annotation for each sequence: # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to -- ----- ---- -------- -------- ------- ------ ------- ------ --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 15.8 2.1 1e-06 0.0058 21 105 240 322 2 -0.1 0.0 0.068 3.8e+02 195 226 342 370 Alignments for each domain: == domain 1 score: 15.8 bits; conditional E-value: 1e-06 PLU-1 21 lrsllneaekikfplkelleeLksfvkeaekwvekaqqllskkqrtRrkneaeeeeeekeklsleelekLleeldslpFdlpeie 105 l +l++ ++ +++ l++eL ++ ++a ++++ + + k++ Rrk + + + e+++ le++++Ll+++++ +F+ + ++ KWMTBOMO14794 240 LVKLVTAERHLHGDSTRLSRELATIENDARAALQLGNRIA-AKNHLRRKHK-VQRKLEQCTKALENVQNLLQQMRDVHFNASIVD 322 5566777777788888999999999999998888777777.6778888888.8999***********************998766 PP == domain 2 score: -0.1 bits; conditional E-value: 0.068 PLU-1 195 laispekeellaklqelleaaekweekakelL 226 + + ++ ++ l+e ++ ++e + + + KWMTBOMO14794 342 VDT---VHDTMDDLKEVMDSYSEMERALGTTI 370 332...25556666655555555555444444 PP |
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