Silkworm Genome Informatics Database

Gene

KWMTBOMO01737 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA006132

Annotation

PREDICTED:_zinc_finger_protein_Gfi-1b_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr4(+):3053803-3105165 View in EpiBrowser

Transcription factor

zf-C2H2

Location in the cell

Mitochondrial Reliability : 1.264 Nuclear Reliability : 1.431

CDS

ATGAAAATAAATGGAGATTTATCAAAACCGTCAGGTGGTCCACGAGGTCGCAATTTTATACAGATGAAGTGGAAAGAGTTAACGGGAATATTAAATAGCGATTCTTCAGGAGATCCTAAGAGTGAGGACAAATGGCGTAAGGTGTGGAGTGATTATAAGAATAATTGCAAGAAAAAGTGTGCTAAAATTAACAGAGCTGCTAGTGGCACTGGTGGCGGACCAGCGCTCCATTTATTATTAACTGACCTTGAACAAAGGGTCATGCAGATAATTGGAGTGCAGGCAGCTACTGGCATGGAAATAAAAGAAGCTGGGTTTCCACAAGAAGAAATTTCAACTGAGAGGCCAAATACTGAAATTATTTTAAAGGAACCAGAAATAGATATAGACAGAAAGACAAGGGAGTATGCTTCAGAGCGTGATAGGGTATATGAGGAATTAGAGAGAGATCGGTTGAGAGTTAGAGAATTTGAGGTACGAGAAAGAGTAAGACAGCGAGATGAAGAGCTACGGATGCAGGGTCAATGGCTGGAATTTATGAAAGAGGCAATGGAAGCTTTTGTGAGAAATGGAGATTTATCAAAACCATCAGGCGGTCCACGAGGTCGCAATTTTATACAGATGAAGTGGAAAGAGTTAACGGGATTACTAAATAGCGATTCTTCAGGAGATCCTAAGAGTGAGGACAAATGGCGTAAGGTGTGGAGTGATTATAAGAATAATTGCAAGAAAAAGTGTGCTAAAATTAATAGAGCTGCTAGTGGCACTGGTGGCGGACCAGCGCTCCATTTATTATTGACTGACCAAGAACAAAGGGTCATGCAGATAATTGGAGTGCAGGCAGCTACTGGCATGGAGATAAAAGAAGCTGGGTTTCCACAAGAAGAAATTTCAACTGAGATGCCAAATACTCAAATTATTTTAAAGGAACCGGAAATAGATTGGAATGCTCCTAGCACAAGCAGCCAACCAACAGTGGCTCCACCACCACCAACTGAGGCTCCCCCTCCAGTCATTAACGAGGAAGAGGAGTGGAACCCTCCGCCGCAGAAAAAAAGAAAAAACAATTTAACAAAAATATTTTTAGATATAGACAGAAAGGCAAGGGAGCATGCTTCAGAGCGTGATAGGGTATATGAGGAATTAGAAAGAGATCGGTTGAGAGTTAGAGAATTTGAGGTACGTGAAAGAGTAAGACAGAGAGATGAAGAGCTACGGATGCAGGAAAAAATCAAGTTTGGCATCAATCGGCTAGTCGGCGATAGAACGGACGAGGATGAAGAAGAACTACACAACAATGAGACTAGAGCTGAAGGCACATCACCAGCTTCACGATGCGGCAGTCCATGCTGGGCTCCATCTCCTCAATCGCCAAGATCAGTTCGATCCAGTTCACCTGAACTTGAAGTGGATTCTCCACCTTCATCACCACGGAGACAGCCCGACTCATCACCTCCACCAAAACGATCAGAAGCATTCTCGGTCAGCGCATTGTTGAGACCAGATGCCCCAAGAGTTCAACCTCAAAGACCATTTTTATATCCACCTTTACCTTTTGCTGAGTTCTTGAGAGACGCTGGCGGCCTTGGTCTCCACGGATGGGGAGGCTACAGTAACCTATATCTTCATGCCGTACAAGCTGCAGGGCCGGAATTGTTGAGGCTTCGAGCGGCAGTGCTTGGAGCTCCAGGACCTCTGACCAGGCCATTGCCGATCGGAGATGTGTATTCATGTGTTAAGTGCGAGAAGATGTTCAGTACACCCCATGGCCTGGAAGTTCACGCGAGAAGATCTCATAACGGCAAAAGACCCTTTGCTTGCGAACAATGCAGTAAGACATTCGGCCATGAAATCAGCTTGAGTCAACACAGGGCACTTCACAGCGTGGCGAAACTCTTCGAGTGCAAACAATGCGGGAAAACCTTCAAGAGATCGAGCACTCTCTCCACTCACCTGTTAATTCATTCCGACACCAGGCCATACCCTTGTCAGTACTGCGGAAAGAGATTCCACCAGAAATCTGATATGAAGAAACACACATACATACACACCGGTGAAAAGCCCCACAAGTGCCAGGTCTGCGGCAAAGCTTTCAGTCAAAGCTCGAATCTGATCACACATTCCCGCAAGCACACCGGCTTCAAGCCGTTCGCTTGCGAGCTTTGCGGGCGCGCTTTTCAACGAAAGGTCGACCTTCGCCGGCATAAAGAGACGCAGCATGCCAATTTGAGGGCGACCCAGCCTATGCAGCCTTCGCATACAGATGTTCACTCCATGCACTCAGATATGCAAATACCTGACCATAGAATAGATATCCGCCCTCATCCCGAGTTGCGGCCTCCGCACCCCGACTTCGGAGCGCCGCCACACATGACCACCGCAGTACCACCACTCCAGCCGTTGCCGTCCTGA

Protein

MKINGDLSKPSGGPRGRNFIQMKWKELTGILNSDSSGDPKSEDKWRKVWSDYKNNCKKKCAKINRAASGTGGGPALHLLLTDLEQRVMQIIGVQAATGMEIKEAGFPQEEISTERPNTEIILKEPEIDIDRKTREYASERDRVYEELERDRLRVREFEVRERVRQRDEELRMQGQWLEFMKEAMEAFVRNGDLSKPSGGPRGRNFIQMKWKELTGLLNSDSSGDPKSEDKWRKVWSDYKNNCKKKCAKINRAASGTGGGPALHLLLTDQEQRVMQIIGVQAATGMEIKEAGFPQEEISTEMPNTQIILKEPEIDWNAPSTSSQPTVAPPPPTEAPPPVINEEEEWNPPPQKKRKNNLTKIFLDIDRKAREHASERDRVYEELERDRLRVREFEVRERVRQRDEELRMQEKIKFGINRLVGDRTDEDEEELHNNETRAEGTSPASRCGSPCWAPSPQSPRSVRSSSPELEVDSPPSSPRRQPDSSPPPKRSEAFSVSALLRPDAPRVQPQRPFLYPPLPFAEFLRDAGGLGLHGWGGYSNLYLHAVQAAGPELLRLRAAVLGAPGPLTRPLPIGDVYSCVKCEKMFSTPHGLEVHARRSHNGKRPFACEQCSKTFGHEISLSQHRALHSVAKLFECKQCGKTFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACELCGRAFQRKVDLRRHKETQHANLRATQPMQPSHTDVHSMHSDMQIPDHRIDIRPHPELRPPHPDFGAPPHMTTAVPPLQPLPS

Uniprot

NA

ProteinModelPortal

NA

PDB

2KMK E-value=1.45948e-33, Score=360

KEGG

101737547 K09223 growth factor independent 1 | (RefSeq) zinc finger protein Gfi-1b

GO

GO:0046872 GO:0003676 GO:0006508 GO:0009982 GO:0006396 GO:0030529 GO:0016020 GO:0005515 GO:0003779 GO:0016021

Length:

803

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.04619

Exp number, first 60 AAs:

2e-05

Total prob of N-in:

0.00245

outside

1 - 803

Pi

249.480805

Theta

204.676037

Tajima's D

0.267802

CLR

1.259109

CSRT

0.44292785360732

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree