HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	8.5	0.4	0.046	2.8	2	20	7	26
2	1.4	0.1	8.1	4.8e+02	2	20	34	52
3	6.5	0.3	0.2	12	1	12	203	214
4	15.9	1.6	0.00021	0.012	1	23	376	398
5	10.4	3.7	0.011	0.68	1	23	412	434
6	21.6	0.9	3.3e-06	0.0002	1	23	486	508
7	12.1	4.6	0.0034	0.21	1	23	524	546
8	21.2	4.8	4.2e-06	0.00025	1	23	552	574
9	15.8	5.9	0.00022	0.013	1	23	580	602
10	21.7	0.5	3e-06	0.00018	1	23	608	630
11	15.4	1.3	0.00029	0.018	1	23	634	656
12	15.7	0.1	0.00024	0.014	1	23	664	687

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.046
                   EET.TTTEEESSHHHHHHHH CS
        zf-C2H2  2 kCp.dCgksFkrksnLkrHi 20
                   kCp  C+++F +ks L  H+
  KWMTBOMO01362  7 KCPvCCDRTFDSKSTLLEHL 26
                   6776699************8 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 8.1
                   EETTTTEEESSHHHHHHHH CS
        zf-C2H2  2 kCpdCgksFkrksnLkrHi 20
                   +Cp+C+ +  +  +L+ H+
  KWMTBOMO01362 34 YCPICDNKQATLVHLVDHL 52
                   6****97777888888886 PP

  == domain 3  score: 6.5 bits;  conditional E-value: 0.2
                    EEETTTTEEESS CS
        zf-C2H2   1 ykCpdCgksFkr 12 
                    y C+ Cg sF++
  KWMTBOMO01362 203 YSCNTCGVSFSS 214
                    89********75 PP

  == domain 4  score: 15.9 bits;  conditional E-value: 0.00021
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y Cp+C+ ++ ++ +L +H+++H
  KWMTBOMO01362 376 YACPHCSAVYENSKSLHAHMKIH 398
                    88*******************99 PP

  == domain 5  score: 10.4 bits;  conditional E-value: 0.011
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y+C+ C  +F+++ +Lk H r+H
  KWMTBOMO01362 412 YECELCCTVFSTNKSLKLHKRMH 434
                    99********************9 PP

  == domain 6  score: 21.6 bits;  conditional E-value: 3.3e-06
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    + C++C+k+F++++ L+ H+++H
  KWMTBOMO01362 486 FNCSICNKKFNSNEYLEMHMNVH 508
                    89*******************99 PP

  == domain 7  score: 12.1 bits;  conditional E-value: 0.0034
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y C +C+++F r+++ ++H r+H
  KWMTBOMO01362 524 YNCLYCHRRFARPHEKVKHERIH 546
                    89*******************99 PP

  == domain 8  score: 21.2 bits;  conditional E-value: 4.2e-06
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    + C++CgksF+ ++ L+ H+rtH
  KWMTBOMO01362 552 HSCEICGKSFRVSYCLTLHMRTH 574
                    68********************9 PP

  == domain 9  score: 15.8 bits;  conditional E-value: 0.00022
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y+Cp+Cgk+Fk  s +++H+ tH
  KWMTBOMO01362 580 YECPHCGKRFKAHSVYNHHLLTH 602
                    99********************9 PP

  == domain 10  score: 21.7 bits;  conditional E-value: 3e-06
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ykCp+C+k Fk++ +L  H ++H
  KWMTBOMO01362 608 YKCPYCPKAFKTSVQLAGHKNSH 630
                    9*******************999 PP

  == domain 11  score: 15.4 bits;  conditional E-value: 0.00029
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    + C +C+++F + +  ++H  tH
  KWMTBOMO01362 634 FSCQHCNRPFASLYAVRVHTETH 656
                    89******************999 PP

  == domain 12  score: 15.7 bits;  conditional E-value: 0.00024
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    + C+ Cg s+ r   L+ H++  H
  KWMTBOMO01362 664 FSCSLCGASYARAFALNDHMKQaH 687
                    89*******************988 PP