HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	3.2	0.4	2.3	1.4e+02	2	23	211	233
2	15.1	1.2	0.00036	0.022	1	23	240	263
3	20.1	1.6	9.6e-06	0.00057	1	23	289	311
4	15.7	5.9	0.00025	0.015	1	23	317	339
5	14.8	0.2	0.00047	0.028	2	21	347	366
6	28.5	0.8	2.1e-08	1.3e-06	1	23	740	762
7	24.3	1.7	4.3e-07	2.6e-05	1	23	768	791
8	20.2	3.1	9.2e-06	0.00055	1	23	797	819

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 2.3
                    EETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirt.H 23 
                    +C+ C+ ++ + ++L +H+   H
  KWMTBOMO01357 211 RCSFCDAPCANIELLDQHLIQrH 233
                    7*****************98777 PP

  == domain 2  score: 15.1 bits;  conditional E-value: 0.00036
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    + C+ C++s++++ +L rH+   H
  KWMTBOMO01357 240 FHCELCNRSYSSRALLLRHRALaH 263
                    78*****************99888 PP

  == domain 3  score: 20.1 bits;  conditional E-value: 9.6e-06
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    + Cp+Cgk+F ++s Lk+H  +H
  KWMTBOMO01357 289 HACPECGKTFATSSGLKQHTHIH 311
                    56*****************9998 PP

  == domain 4  score: 15.7 bits;  conditional E-value: 0.00025
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ++C++C k +++ snL+rH r+H
  KWMTBOMO01357 317 FQCKVCFKAYTQFSNLCRHKRMH 339
                    89********************9 PP

  == domain 5  score: 14.8 bits;  conditional E-value: 0.00047
                    EETTTTEEESSHHHHHHHHH CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHir 21 
                    +C++Cg+sF +  +L++H r
  KWMTBOMO01357 347 ECGKCGQSFASYASLTKHKR 366
                    6*****************87 PP

  == domain 6  score: 28.5 bits;  conditional E-value: 2.1e-08
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y C+ Cgk+F+r+ nL+rH+rtH
  KWMTBOMO01357 740 YACKFCGKVFPRSANLTRHLRTH 762
                    88********************9 PP

  == domain 7  score: 24.3 bits;  conditional E-value: 4.3e-07
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    ykC++C +sF+ +snL+rH r  H
  KWMTBOMO01357 768 YKCKYCERSFSISSNLQRHVRNiH 791
                    9********************988 PP

  == domain 8  score: 20.2 bits;  conditional E-value: 9.2e-06
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ++Cp C+++F ++ nL rH+++H
  KWMTBOMO01357 797 FRCPLCDRCFGQQTNLDRHLKKH 819
                    89********************9 PP