SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO01357
Pre Gene Modal
BGIBMGA008996
Annotation
PREDICTED:_PR_domain_zinc_finger_protein_16-like_isoform_X1_[Bombyx_mori]
Location
Bomo_Chr3(-):8852101-8904886      View in EpiBrowser
Transcription factor
zf-C2H2
Location in the cell
Nuclear   Reliability : 4.469
 

Sequence

CDS
ATGGCGCCAGGAGCCGACATGAAAGATTATTACGCGACTCTGGACTTTGGTCTACCCGAAACATACTTGTCCAATTTCCCCGACTACGCCAGGCCCTACTTGCCGAGGCCTCTCGATTTACCCGATCAAAAGTTCGTAGATGTGAAAAACGAAAATGACGACACAAAAGATGATGACGTAGGCGATCCAGAACTGAACCTGCCCATAGAATTAGCGTTGAAAAACGATGGAGTGTACGCGCGCGCTAATATTGCTGTCGGAACAAAATACGGACCTTTTATAGGCAAATGGGAGACTCAGCCGTTGGACCGGAGATACGCCTGGGAGATTATCGGCAAGAACAGCATACGATGCTGGATGGACGGGACCACGAACAAGACGAACTGGCTCAAACTGGTTCGTTCTAGCAGCTACACTCGGGACGTCAACATGCAGCATGTTTTATTATCAGGCGAAATATGGTATAAGGCGACCCGAGATATTCCTTCCGGACAGGAGCTGCTGCTCGGACCCAGGACCCCGCTGACGTTCGAAGTATTTGTACCCAATGCTGACGAGCGTCAAGCAACCAGCGAAAAGTTCAGCTCCCAGTCGATAACTGAAGAAGAAGACAGAGAAGACACAGAGCCAAGGTGTTCCTTCTGCGACGCTCCTTGCGCTAATATAGAACTGCTCGACCAGCATCTGATCCAGCGTCACGGTCAGCCGGCCGGTGCCTTCCACTGCGAGCTCTGCAACCGCTCGTACAGCTCACGGGCGCTGCTACTCAGACACCGCGCTCTCGCACATACCGACATCAGGAAATATCCTTGCGAAAACTGCCCCAAGCGCCACATCCGCGTGCAGCACGTCGGCGCCCGCAGCCACGCCTGTCCCGAGTGCGGCAAGACCTTCGCCACCTCCTCCGGCCTCAAGCAGCACACGCACATACACTCCAGCGTCAAGCCATTCCAGTGCAAAGTTTGCTTTAAGGCCTACACTCAGTTTTCAAATCTGTGCCGCCATAAACGCATGCACGTCGCCTGTCGTGCAGTGGTTGAATGCGGCAAGTGTGGACAGTCCTTCGCATCATACGCATCCCTGACCAAGCACAAGAGATTCTGCGATACTGCCACGGCATCGGTAAATTTAAGAGGACAAATGCCGCAAGGACTGCCCCCGATTCCACCTTTGCCAAACGTTGCGATGAATCCTGCAAATAACGCCAATCCATTCCCAATGTACAGAGGCCATACTTTGCCGTTGCATTATAACACGTTTGCCCACTACCCAGCATTGCTATCGGCTGCAGCCGCTGCTGCTTATTCACCTGACTTTTTGAATCCATTCCTTAATGTACAAGGAGCCGCTAGATTGGCCATGGAACACGATCTTGCTATGTCAAATGCTAACTTAGTTTCCAAGCAACAAGAAGGTAGAATGTCTGTCAAAAGCATGGACAGCGGCACGTCCCTCGATGATTCGAAAAAAATGAAGGATTTTGAATCAGAATTGAACAAGAAAGACAGTGCTAGTTCTGATAGAAACACGCCTAGTAAATACCCGGGCACATCCAAAAAAATGTCTTCACCATCAATTGAAGAAGTTTCCACGCAGCACAATCCATCAATAATGGCAATGCAGACTCCTATTGTACCATTCAATTTCACAAGAGACGAAATGAAACGAAAGTCTCCATTTAACTTCTCACTAAAACTAAACAACAATGAAGTTATGGGGGTGAAACCATCTTCTCCATCTTTACCGAAAGATTTATCAAAGAATGTAATGGAAGACGATAAAGCTTCCGAGTATTCTGAGGCGGAAGAAGATGCCAAAAAAGATGAAGCAGACCAGCCTCTCGACTTGTCCGTTACAAAGAAACAGAGCGACAAAGAATCAGAAGCGGAAAACGATGACCGTTCCTTTCGTAACTCTGTCAAGTCATATTCACCACCAGAGAGTCCTCTCACCAGAAGCAAGACACCCGAGAATGACACCACTGATGTGGACGTCGAGGGCGTAGAGCCAAAGAGAGACTCTCCCACACAGATGGTCTCCCCATTTCCGTCATTCCACGCATCCGAGTCTATCCTGAATGCATCACACTCTCCTTACGTTCCGAGTCCTTTCAATTTTTTATCCCCCCTTCTGGGTACCGACGGACCGGACCGGCAACAGAGCGCGTACGCCAAGTTCAGAGAACTGAACTCCGGCTCGAGGAAGGGTCGGGATCAGTACGCCTGCAAGTTCTGCGGGAAGGTTTTCCCGCGCAGCGCCAACCTGACGCGGCATCTGCGCACTCACACCGGTGAGCAACCCTACAAATGTAAATACTGCGAGCGCTCGTTTTCAATCTCGTCGAATCTGCAGCGACACGTGAGGAACATTCACAACAAGGAGCGGCCTTTCCGGTGTCCGCTATGTGATAGGTGCTTCGGGCAGCAGACAAACCTCGATCGGCATTTGAAGAAGCACGAGGCTGAAGGCGGCGATTCACCGAGTTCTGCAGATACGGAGCGCGACGATGCGTACTTTGATGATATCCGTTCCTTCATGGGAAAGGTGACGTGCTCACCTCCGCCGCTCGCCATCTCTACATAG
Protein
MAPGADMKDYYATLDFGLPETYLSNFPDYARPYLPRPLDLPDQKFVDVKNENDDTKDDDVGDPELNLPIELALKNDGVYARANIAVGTKYGPFIGKWETQPLDRRYAWEIIGKNSIRCWMDGTTNKTNWLKLVRSSSYTRDVNMQHVLLSGEIWYKATRDIPSGQELLLGPRTPLTFEVFVPNADERQATSEKFSSQSITEEEDREDTEPRCSFCDAPCANIELLDQHLIQRHGQPAGAFHCELCNRSYSSRALLLRHRALAHTDIRKYPCENCPKRHIRVQHVGARSHACPECGKTFATSSGLKQHTHIHSSVKPFQCKVCFKAYTQFSNLCRHKRMHVACRAVVECGKCGQSFASYASLTKHKRFCDTATASVNLRGQMPQGLPPIPPLPNVAMNPANNANPFPMYRGHTLPLHYNTFAHYPALLSAAAAAAYSPDFLNPFLNVQGAARLAMEHDLAMSNANLVSKQQEGRMSVKSMDSGTSLDDSKKMKDFESELNKKDSASSDRNTPSKYPGTSKKMSSPSIEEVSTQHNPSIMAMQTPIVPFNFTRDEMKRKSPFNFSLKLNNNEVMGVKPSSPSLPKDLSKNVMEDDKASEYSEAEEDAKKDEADQPLDLSVTKKQSDKESEAENDDRSFRNSVKSYSPPESPLTRSKTPENDTTDVDVEGVEPKRDSPTQMVSPFPSFHASESILNASHSPYVPSPFNFLSPLLGTDGPDRQQSAYAKFRELNSGSRKGRDQYACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKERPFRCPLCDRCFGQQTNLDRHLKKHEAEGGDSPSSADTERDDAYFDDIRSFMGKVTCSPPPLAIST

Summary

Uniprot
A0A2H1VUS2   A0A2A4JSH1   A0A2A4JTB4   H9JHJ8   A0A194RMT2   A0A194PW17   + More
A0A2W1C3X9   A0A212ER90   A0A0L7KSS9   A0A1E1VZX7  
Pubmed
19121390    26354079    28756777    22118469    26227816   
EMBL
ODYU01004382    SOQ44202.1    NWSH01000715    PCG74638.1    PCG74640.1    BABH01012629    + More
KQ459989    KPJ18729.1    KQ459591    KPI96954.1    KZ149894    PZC78873.1    AGBW02013090    OWR43995.1    JTDY01006065    KOB66322.1    GDQN01010764    JAT80290.1   
Proteomes
UP000218220    UP000005204    UP000053240    UP000053268    UP000007151    UP000037510    + More
PRIDE
H9JHJ8   
Pfam
PF00096   zf-C2H2
Interpro
IPR036236   Znf_C2H2_sf        + More
IPR013087   Znf_C2H2_type       
IPR003656   Znf_BED       
SUPFAM
SSF57667   SSF57667       
ProteinModelPortal
A0A2H1VUS2   A0A2A4JSH1   A0A2A4JTB4   H9JHJ8   A0A194RMT2   A0A194PW17   + More
A0A2W1C3X9   A0A212ER90   A0A0L7KSS9   A0A1E1VZX7  
PDB
2I13     E-value=3.33636e-16,     Score=211

Ontologies

KEGG
101735622    K22410 PR domain zinc finger protein 16 | (RefSeq) PR domain zinc finger protein 16-like
GO
GO:0003676   GO:0006355   GO:0003677   GO:0046872   GO:0005524   GO:0008026   GO:0016820   GO:0016042   GO:0005634   GO:0006334   GO:0003779   GO:0016021  

Topology

Length:
860
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.01314
Exp number, first 60 AAs:
0.00019
Total prob of N-in:
0.00060
outside
1  -  860
 
 

Population Genetic Test Statistics

Pi
286.325666
Theta
186.036848
Tajima's D
1.662634
CLR
0.143673
CSRT
0.822508874556272
Interpretation
Uncertain
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