HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	17.6	0.2	6e-05	0.0036	3	23	48	68
2	21.5	1.4	3.4e-06	0.0002	1	23	74	96
3	19.3	2.4	1.7e-05	0.001	1	23	102	124
4	15.1	2.2	0.00037	0.022	1	23	130	152
5	7.8	1.8	0.079	4.8	1	23	159	181
6	22.2	1.9	2e-06	0.00012	1	23	187	209
7	7.4	1.6	0.1	6.2	1	23	216	238
8	20.2	1.3	9e-06	0.00054	1	23	244	266
9	11.0	1.1	0.0073	0.44	1	23	273	295
10	20.3	1.5	8.2e-06	0.00049	1	23	301	323
11	10.7	0.3	0.0093	0.55	1	20	329	348
12	19.6	1.4	1.3e-05	0.00081	2	23	358	379
13	21.6	1.5	3.3e-06	0.0002	1	23	385	408

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 6e-05
                   ETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2  3 CpdCgksFkrksnLkrHirtH 23
                   C++Cgk+ ++ s++ +H++ H
  KWMTBOMO01318 48 CKVCGKVLSSASSYYVHMKLH 68
                   *******************99 PP

  == domain 2  score: 21.5 bits;  conditional E-value: 3.4e-06
                   EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2  1 ykCpdCgksFkrksnLkrHirtH 23
                   ++C++C   F+rk  L++H+rtH
  KWMTBOMO01318 74 FQCTVCEAAFCRKPYLEVHMRTH 96
                   89********************9 PP

  == domain 3  score: 19.3 bits;  conditional E-value: 1.7e-05
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ++C+ C k+F++ks+L++H r+H
  KWMTBOMO01318 102 FQCDLCLKRFTQKSSLNTHKRVH 124
                    89********************9 PP

  == domain 4  score: 15.1 bits;  conditional E-value: 0.00037
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ++C++C ksF++k  L+ H ++H
  KWMTBOMO01318 130 FQCTVCLKSFTQKCALNLHEKIH 152
                    89******************999 PP

  == domain 5  score: 7.8 bits;  conditional E-value: 0.079
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ++C  C+  F+ k  L+ H rtH
  KWMTBOMO01318 159 FQCLSCPAAFTCKQYLEIHTRTH 181
                    89********************9 PP

  == domain 6  score: 22.2 bits;  conditional E-value: 2e-06
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y+C++C k+F++ks+L+ H rtH
  KWMTBOMO01318 187 YQCDICLKRFTQKSSLNIHKRTH 209
                    9*********************9 PP

  == domain 7  score: 7.4 bits;  conditional E-value: 0.1
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ++C  C+  F+ k  L+ H rtH
  KWMTBOMO01318 216 FQCLQCPAAFTCKQYLEIHNRTH 238
                    89********************9 PP

  == domain 8  score: 20.2 bits;  conditional E-value: 9e-06
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y+C++C k+F +ks L+ H rtH
  KWMTBOMO01318 244 YQCDVCLKRFAQKSTLNIHKRTH 266
                    9*********************9 PP

  == domain 9  score: 11.0 bits;  conditional E-value: 0.0073
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y+C +C+  F+ k  L+ H rtH
  KWMTBOMO01318 273 YQCMECPAAFTCKPYLEIHTRTH 295
                    9*********************9 PP

  == domain 10  score: 20.3 bits;  conditional E-value: 8.2e-06
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ++C++C k+F++ks L+ H r+H
  KWMTBOMO01318 301 FECDVCYKRFTQKSTLNIHKRIH 323
                    89*******************99 PP

  == domain 11  score: 10.7 bits;  conditional E-value: 0.0093
                    EEETTTTEEESSHHHHHHHH CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHi 20 
                    y C++C k+F  ks  ++H+
  KWMTBOMO01318 329 YACDICQKRFAVKSYVTAHR 348
                    88*****************6 PP

  == domain 12  score: 19.6 bits;  conditional E-value: 1.3e-05
                    EETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirtH 23 
                     C+ C+++F++ks++  HirtH
  KWMTBOMO01318 358 NCDRCSMTFTSKSQFALHIRTH 379
                    5********************9 PP

  == domain 13  score: 21.6 bits;  conditional E-value: 3.3e-06
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    y+C++Cg+sF r s L rH ++ H
  KWMTBOMO01318 385 YECSVCGRSFVRDSYLIRHHNRvH 408
                    99*******************999 PP