HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	18.9	2.1	2.3e-05	0.0014	1	23	207	229
2	24.6	1.7	3.5e-07	2.1e-05	1	23	235	257
3	16.6	1.1	0.00012	0.0074	1	23	263	285
4	25.3	3.4	2.1e-07	1.3e-05	1	23	291	313
5	18.5	4.1	3e-05	0.0018	1	23	319	341

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 2.3e-05
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    + C+ C++ F+ ++nL  H rtH
  KWMTBOMO01221 207 FICKFCNRQFTKSYNLLIHERTH 229
                    78********************9 PP

  == domain 2  score: 24.6 bits;  conditional E-value: 3.5e-07
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y C++Cgk F+r+++L+ H+ +H
  KWMTBOMO01221 235 YSCDICGKAFRRQDHLRDHRYIH 257
                    89*****************9888 PP

  == domain 3  score: 16.6 bits;  conditional E-value: 0.00012
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    +kC +Cgk F+++  L +H   H
  KWMTBOMO01221 263 FKCLECGKGFCQSRTLAVHKILH 285
                    8******************9988 PP

  == domain 4  score: 25.3 bits;  conditional E-value: 2.1e-07
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    +kCp+C++sF+++snLk+H+ tH
  KWMTBOMO01221 291 HKCPVCSRSFNQRSNLKTHLLTH 313
                    79********************9 PP

  == domain 5  score: 18.5 bits;  conditional E-value: 3e-05
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y C+ Cgk+F+r+ +L+rH  tH
  KWMTBOMO01221 319 YNCSSCGKVFRRNCDLRRHSLTH 341
                    89*****************9999 PP