Silkworm Genome Informatics Database

Gene

KWMTBOMO01221

Pre Gene Modal

BGIBMGA008844

Annotation

sob_protein_[Bombyx_mori]

Location

Bomo_Chr3(+):5354791-5358676 View in EpiBrowser

Transcription factor

zf-C2H2

Location in the cell

Nuclear Reliability : 4.48

CDS

ATGATGAATTCTTTACAACAGGCCGCGCTTTTACCTTCGAATTCCGCCGCCGCTGCCGCTTTGAACTTACAAGCTTTAGAGTCTTATTTGACATTACAACGTTTGACATCTGTTTCTTCAGTTAACAATGTTACAAGTCAGGCTAATACATCAGAAACAAATTCGTCATCTAAACAAGATATACTTAGAATAGCAACGGCAAGTGCTAAAATAAGTGAAATTGATGTGATCGACAGTTCGTCAAAAGATTACTCACCGAAAACACCGGAGGGATATCCGTTATCTGATGCCATCGCCGCTGAAGATGTAGACCTATCTGAAGAAGTTGAAGAAGACCTAGCATTATTAGATAATGAAGACGAGTTCACTTTGGAACAGCATTTGGAATCGACATCAAAAGGATACGGCTACAATTCCCCATCGTCTTTAGACAATGGCTATCCGAGTCTTCTAATGAACGCAGTATACCAGCAGCAACTGAACAGCAGTCCCTCACAGCCTCCTCTATCACCACAACCATCGAATTCGTCAAAATCAACAAACAGTTCCACTTCTTCGAGTAGTAGCATATGTAATAAACAAAAAACCGCAGGAAGCGGACCTAGGACAAAGAAGCAATTTATCTGTAAATTTTGCAATCGGCAATTTACAAAATCGTATAATTTGCTTATTCATGAACGAACTCACACAGATGAGAGGCCGTATTCTTGCGACATCTGCGGAAAGGCTTTCCGTCGGCAAGATCACCTAAGAGATCACAGGTACATCCATTCTAAAGAAAAGCCTTTCAAATGTCTCGAATGTGGAAAAGGGTTTTGTCAGTCAAGAACATTGGCGGTTCACAAGATTCTGCACATGGAAGAATCTCCACACAAATGTCCCGTTTGCAGTAGAAGTTTCAACCAAAGGTCGAACCTGAAGACCCACCTTCTAACGCACACCGATATAAAGCCATACAACTGTTCGTCATGTGGGAAGGTCTTCAGAAGGAATTGCGACCTTAGACGCCATAGTTTAACGCACAATCTCGTTGGCATATCTTCTGTTAATACCTCTCCAAGCGGAAGTAACGGGAAGAGTCCATTGCTTAACCCGAATTTCCCAATTGACAGTTTAGATACAGAGGATGAAAATTAG

Protein

MMNSLQQAALLPSNSAAAAALNLQALESYLTLQRLTSVSSVNNVTSQANTSETNSSSKQDILRIATASAKISEIDVIDSSSKDYSPKTPEGYPLSDAIAAEDVDLSEEVEEDLALLDNEDEFTLEQHLESTSKGYGYNSPSSLDNGYPSLLMNAVYQQQLNSSPSQPPLSPQPSNSSKSTNSSTSSSSSICNKQKTAGSGPRTKKQFICKFCNRQFTKSYNLLIHERTHTDERPYSCDICGKAFRRQDHLRDHRYIHSKEKPFKCLECGKGFCQSRTLAVHKILHMEESPHKCPVCSRSFNQRSNLKTHLLTHTDIKPYNCSSCGKVFRRNCDLRRHSLTHNLVGISSVNTSPSGSNGKSPLLNPNFPIDSLDTEDEN

Uniprot

A0A0U2IB10 A0A2H1WS42 A0A2A4IS39 A0A194QP83 A0A0N1IFF2 A0A212EYC2 + More
A0A1Y1MY68 A0A1W4X6J5 U4UG18 N6UB06 D6WW96

Pubmed

26354079 22118469 28004739 23537049 18362917 19820115 + More

EMBL

KT254334 ALR81974.1 ODYU01010643 SOQ55890.1 NWSH01008444 PCG62551.1 + More
KQ458756 KPJ05291.1 KQ460317 KPJ16017.1 AGBW02011540 OWR46499.1 GEZM01023574 JAV88297.1 KB632280 ERL91313.1 APGK01036083 APGK01036084 KB740932 ENN77836.1 KQ971361 EFA09194.1

Proteomes

UP000218220 UP000053268 UP000053240 UP000007151 UP000192223 UP000030742 + More
UP000019118 UP000007266

Pfam

PF00096 zf-C2H2

Interpro

IPR036236 Znf_C2H2_sf + More
IPR013087 Znf_C2H2_type

SUPFAM

SSF57667 SSF57667

ProteinModelPortal

A0A0U2IB10 A0A2H1WS42 A0A2A4IS39 A0A194QP83 A0A0N1IFF2 A0A212EYC2 + More
A0A1Y1MY68 A0A1W4X6J5 U4UG18 N6UB06 D6WW96

PDB

2EE8 E-value=1.64319e-38, Score=400

KEGG

101739560 K09215 odd-skipped | (RefSeq) protein sister of odd and bowel

GO

GO:0003676 GO:0046872 GO:0004497 GO:0005507 GO:0006000 GO:0004553 GO:0005634 GO:0006334 GO:0003779 GO:0016021

Length:

378

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01869

Exp number, first 60 AAs:

0.0185

Total prob of N-in:

0.00849

outside

1 - 378

Pi

310.117062

Theta

230.268458

Tajima's D

1.082684

CLR

0.062679

CSRT

0.67791610419479

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics