HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	22.0	2.1	2.5e-06	0.00015	1	23	171	193
2	24.8	1.7	3.1e-07	1.9e-05	1	23	199	221
3	18.5	1.4	3e-05	0.0018	1	23	227	249
4	27.0	3.3	6.1e-08	3.7e-06	1	23	255	277

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 2.5e-06
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    + C++C++ F+ ++nL  H rtH
  KWMTBOMO01220 171 FICKYCNRQFTKSYNLLIHERTH 193
                    78********************9 PP

  == domain 2  score: 24.8 bits;  conditional E-value: 3.1e-07
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y C++Cgk F+r+++L+ H+ +H
  KWMTBOMO01220 199 YSCDICGKAFRRQDHLRDHRYIH 221
                    89*****************9888 PP

  == domain 3  score: 18.5 bits;  conditional E-value: 3e-05
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    +kC++Cgk F+++  L +H   H
  KWMTBOMO01220 227 FKCTECGKGFCQSRTLAVHKILH 249
                    8******************9988 PP

  == domain 4  score: 27.0 bits;  conditional E-value: 6.1e-08
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    +kCp+C+ksF+++snLk+H+ tH
  KWMTBOMO01220 255 HKCPVCNKSFNQRSNLKTHLLTH 277
                    79********************9 PP