Gene

KWMTBOMO01220

Pre Gene Modal

BGIBMGA009541

Annotation

PREDICTED:_protein_odd-skipped_[Bombyx_mori]

Location

Bomo_Chr3(+):5244871-5247159      View in EpiBrowser

Full name

Protein odd-skipped      

Transcription factor

zf-C2H2

Location in the cell

Nuclear   Reliability : 4.129

CDS

ATGGAAGATAAGCCGTACAGTGTTGATAGTTCGGACGATATTAACGTGGACGACGACGATGAGCATACCGAAGAAAATCACAGCTACCCACCAGACTTCCCTATAGAAGCATTGGTAAAATTAGAGCGACCGTCACCCCCTTTGCCGACGCCACCACACACACCCACAGACGACACGCCCCCAGCTGTCGTTATCTCCCGTCACCAACCCGCGTGGATTCCACCCGCACCCCAATCGTACCCCACCTATCCTCGTCCAATGCAATCTCCGTACTCCTACGATAAAATGCCCTACTCACACCCGGCCATGTCAGCGTACATGCAGGCGCAAGTAGCGACGCTGCCACCCTCCGCCCCATACCACGCTATGCTCGTGAATCAGTGGATAAGAAACGCCGCGCTGTATCATCATTCCCTGCGCTATCCGGGAGTGATGGCCCAAAGAATGCCCGGAAGAAATCCTCCGCCGCTAAGAGCGCCAAGCGTTCCCGGAGCGAGACCAAAGAAACAGTTCATCTGCAAATACTGCAATCGCCAATTCACAAAGTCCTACAACTTATTGATTCACGAGAGAACGCACACTGACGAGAGACCTTACTCGTGCGACATTTGCGGGAAGGCATTCAGAAGACAAGACCACCTGAGAGATCATAGGTACATTCATTCGAAGGAGAAGCCGTTTAAGTGCACGGAATGCGGGAAAGGATTCTGCCAATCGAGAACGTTAGCGGTGCACAAGATTTTGCACATGGAAGAATCTCCGCACAAATGTCCGGTCTGCAACAAGAGCTTCAACCAAAGATCTAATCTGAAGACGCATTTGCTGACGCACAGCGAAGCGAACAAACACCATTTGGACCATTTGGATGGTTGTCAAGAGGTCTCTTCAACAAGCCAAACGGACAGCTCTTTGTTGGATCTGTCCCATAAAAGTCCCGTTGCGTTACCGCAACAGCTTCAGCCACTTGTCAGCCCTCATCAATCTCCTGTCGAAGGGCCGAAAAGGACATTAGGATTCTCAATAGAGGACATTATGAAACGTTAA

Protein

MEDKPYSVDSSDDINVDDDDEHTEENHSYPPDFPIEALVKLERPSPPLPTPPHTPTDDTPPAVVISRHQPAWIPPAPQSYPTYPRPMQSPYSYDKMPYSHPAMSAYMQAQVATLPPSAPYHAMLVNQWIRNAALYHHSLRYPGVMAQRMPGRNPPPLRAPSVPGARPKKQFICKYCNRQFTKSYNLLIHERTHTDERPYSCDICGKAFRRQDHLRDHRYIHSKEKPFKCTECGKGFCQSRTLAVHKILHMEESPHKCPVCNKSFNQRSNLKTHLLTHSEANKHHLDHLDGCQEVSSTSQTDSSLLDLSHKSPVALPQQLQPLVSPHQSPVEGPKRTLGFSIEDIMKR

Description

Pair-rule protein that determines both the size and polarity of even-numbered as well as odd-numbered parasegments during embryogenesis. DNA-binding transcription factor that acts primarily as a transcriptional repressor but can also function as a transcriptional activator, depending on the stage of development and spatial restrictions. May function redundantly with odd and drm in leg joint formation during the larval stages, acting downstream of Notch activation.

Similarity

Belongs to the Odd C2H2-type zinc-finger protein family.

Keywords

Activator   Complete proteome   Developmental protein   DNA-binding   Metal-binding   Nucleus   Pair-rule protein   Reference proteome   Repeat   Repressor   Transcription   Transcription regulation   Zinc   Zinc-finger  

Feature

chain  Protein odd-skipped

Uniprot

H9JJ40   A0A2W1BNL9   A0A2H1X010   A0A0N1PIG0   A0A194Q0W2   A0A212ERT7   + More
A0A0L7LCT0   A0A1Y1MTS8   A0A0T6BEZ8   A0A154PLI2   A0A1A9WHZ9   A0A0L7QNF1   A0A1A9V075   A0A1B0G5Q1   A0A1B0A815   A0A1B0AZ84   A0A1A9YR17   A0A0L0BZ98   A0A158P1R7   A0A2A3EKA1   F4WKF1   A0A195BS66   A0A088AEM3   A0A0C9RJZ8   A0A0K8TYD7   E0VDT0   A0A0K8V8I0   A0A034VMR8   A0A1L8DDA2   B4Q9M8   B4I311   B3N346   A0A1I8NQB3   P23803  

Pubmed

19121390    28756777    26354079    22118469    26227816    28004739    + More
26108605    21347285    21719571    20566863    25348373    17994087    22936249    2120051    10731132    12537572    12537569    7750646    9806933    10960790    14597202   

EMBL

BABH01040265    KT254332    ALR81972.1    KZ150022    PZC74877.1    ODYU01012339    + More
SOQ58597.1    KQ460317    KPJ16018.1    KQ459583    KPI98634.1    AGBW02012932    OWR44202.1    JTDY01001744    KOB73016.1    GEZM01023093    JAV88588.1    LJIG01001026    KRT85914.1    KQ434962    KZC12693.1    KQ414864    KOC60011.1    CCAG010008430    JXJN01006207    JRES01001119    KNC25355.1    ADTU01006771    KZ288230    PBC31616.1    GL888199    EGI65375.1    KQ976419    KYM89354.1    GBYB01008525    JAG78292.1    GDHF01032815    JAI19499.1    DS235088    EEB11536.1    GDHF01017133    JAI35181.1    GAKP01015213    JAC43739.1    GFDF01009666    JAV04418.1    CM000361    CM002910    EDX03639.1    KMY87925.1    CH480820    EDW54156.1    CH954177    EDV57645.1    X57480    AE014134    BT015214   

Proteomes

UP000005204    UP000053240    UP000053268    UP000007151    UP000037510    UP000076502    + More
UP000091820    UP000053825    UP000078200    UP000092444    UP000092445    UP000092460    UP000092443    UP000037069    UP000005205    UP000242457    UP000007755    UP000078540    UP000005203    UP000009046    UP000000304    UP000001292    UP000008711    UP000095300    UP000000803   

PRIDE

H9JJ40    P23803   

Pfam

PF00096   zf-C2H2

Interpro

IPR013087   Znf_C2H2_type        + More
IPR036236   Znf_C2H2_sf       

SUPFAM

SSF57667   SSF57667       

ProteinModelPortal

H9JJ40   A0A2W1BNL9   A0A2H1X010   A0A0N1PIG0   A0A194Q0W2   A0A212ERT7   + More
A0A0L7LCT0   A0A1Y1MTS8   A0A0T6BEZ8   A0A154PLI2   A0A1A9WHZ9   A0A0L7QNF1   A0A1A9V075   A0A1B0G5Q1   A0A1B0A815   A0A1B0AZ84   A0A1A9YR17   A0A0L0BZ98   A0A158P1R7   A0A2A3EKA1   F4WKF1   A0A195BS66   A0A088AEM3   A0A0C9RJZ8   A0A0K8TYD7   E0VDT0   A0A0K8V8I0   A0A034VMR8   A0A1L8DDA2   B4Q9M8   B4I311   B3N346   A0A1I8NQB3   P23803  

PDB

2EE8     E-value=3.08905e-37,     Score=388

KEGG

101744615    K09215 odd-skipped | (RefSeq) protein odd-skipped

GO

GO:0003676   GO:0007366   GO:0007443   GO:0045944   GO:0016348   GO:0000122   GO:0003700   GO:0003677   GO:0045893   GO:0046872   GO:0007350   GO:0007389   GO:0006357   GO:0005634   GO:0045892   GO:0004497   GO:0005507   GO:0006000   GO:0004553   GO:0006334   GO:0003779   GO:0016021  

Subcellular location

Nucleus  

Length:

347

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01157

Exp number, first 60 AAs:

0

Total prob of N-in:

0.02509

outside

1  -  347

 

 

Pi

216.574328

Theta

188.018266

Tajima's D

0.558051

CLR

19.314826

CSRT

0.533123343832808

Interpretation

Uncertain