HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	17.9	2.1	5e-05	0.003	1	23	247	269
2	23.6	1.7	7.5e-07	4.5e-05	1	23	275	297
3	17.3	1.4	7.3e-05	0.0043	1	23	303	325
4	24.3	3.4	4.6e-07	2.7e-05	1	23	331	353
5	21.6	2.5	3.1e-06	0.00019	1	23	359	381

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 5e-05
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    + C+ C++ F+ ++nL  H rtH
  KWMTBOMO01219 247 FICKFCNRQFTKSYNLLIHERTH 269
                    78********************9 PP

  == domain 2  score: 23.6 bits;  conditional E-value: 7.5e-07
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y C++Cgk F+r+++L+ H+ +H
  KWMTBOMO01219 275 YSCDICGKAFRRQDHLRDHRYIH 297
                    89*****************9888 PP

  == domain 3  score: 17.3 bits;  conditional E-value: 7.3e-05
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    +kC++Cgk F+++  L +H   H
  KWMTBOMO01219 303 FKCTECGKGFCQSRTLAVHKILH 325
                    8******************9988 PP

  == domain 4  score: 24.3 bits;  conditional E-value: 4.6e-07
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    +kCp+C++sF+++snLk+H+ tH
  KWMTBOMO01219 331 HKCPVCSRSFNQRSNLKTHLLTH 353
                    79********************9 PP

  == domain 5  score: 21.6 bits;  conditional E-value: 3.1e-06
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y+C+ Cgk+F+r+ +L+rH  tH
  KWMTBOMO01219 359 YECNSCGKVFRRNCDLRRHALTH 381
                    99*******************99 PP