Silkworm Genome Informatics Database

Gene

KWMTBOMO01219

Pre Gene Modal

BGIBMGA008808

Annotation

PREDICTED:_ras-responsive_element-binding_protein_1_[Papilio_polytes]

Location

Bomo_Chr3(+):5105795-5147641 View in EpiBrowser

Transcription factor

zf-C2H2

Location in the cell

Nuclear Reliability : 4.162

CDS

ATGTCTGAGAACGGTGGAACAGCAGTATCAAGATCCTCCACACCTCATCCAGTGACCGAAGCACAAGCCAATGCTCCCCTGCGGTCGAGACATGATCAGTTTCTCGCTAGTACCACTGAACGCACGCAGCAAAGGCAATCTTCCAGCGGCAGAAATCCAAGTGTCAGCTTCGAGTCTCCACCACTGCCTTACCATAGGCAGATAGCTACCGGGTCCTTACTAACGTCATCCCATCGAGAATCATCAGCTTTTGTACCGGTGGTACCAACAAGATCGATGCATCCTGTCATGTATCCTAGCGAGATGCATCCAGCATTGATACCGTCTGAAATAATAGAGAGAGAACGTATGCTAGATAGAGAAAGAAACGAACCAGCGAAAGGCTCACCGGATAGAGCTCCAGCAAGCTTTCCCAAAAGAAGCTCGTTCGATTTAATGGCTATGATGGTTGAAAAAAGAAAAGAGGTGGCACTACGAGAAGCTGCAGCGGCAATGCTACTCCCTCATCACAGAGCATCGTCAATGGACGGTATGATGTCTGATGGGTCTCCGCAACCTCCGATTTACGGGCCTCCCGGTGCGTTCCTTGGAGCGCCGGGTCCTTCTCCGACAGCTGCTGGAAACTTTACATTTCCTGGAGCGGGTCTATTCCCACCTAATGCCGGGCCGCACCAGATCCATCCGTTAGACCGTAGGTTGCTGAGAGCGCCTGGCCGAGCTTCGCGGCCGAAGAAACAATTCATTTGTAAATTTTGCAACCGACAATTTACGAAATCCTACAACCTACTCATCCACGAGAGAACCCATACAGACGAGCGGCCGTATTCCTGTGATATCTGCGGAAAGGCATTCAGAAGACAAGACCACTTACGAGACCATCGGTACATACACTCCAAAGAGAAGCCTTTCAAATGCACAGAATGTGGCAAAGGTTTTTGCCAGTCGAGGACGTTGGCCGTTCACAAAATTCTACACATGGAAGAGTCACCACACAAATGTCCAGTTTGCAGCAGAAGCTTCAACCAACGATCCAATTTGAAGACACATCTATTAACACACACAGACCATAAACCTTATGAATGCAATTCATGTGGGAAAGTGTTCAGACGTAACTGTGATCTTCGGAGACATGCACTTACTCATGCAGTCGGTGACGTACCACCGGGAGATGTGCTAGACGTAGGCGAAGAAGACATCGGAAGACCAGGATCTCCCATTGAACCGGGCTATGATGATGAAGATGCCGAAATTTCATCACCTGAACACTCCCCAGTGCGGAGAGCAAGATCTTCATCAGTGGAAAGCATTGGACAAGAACCACAAAGTGAGGAAAAACCACGACGGCAATCGCCAACACCTGTAGAACGCACCCATTGTCATCACAATGAGCAAAGGGACAGAGCAAGCCCATACACAATGCGTCCACAACACACAGACAAACATCGAGCTTACTCATCAGATGAATACGAAAAACGTCGATACACTACTGAGGAAATAATGGAAAAAGAAATGCGCTACACAGAGATTCCTGAACAACAAGTACGGCATCCACAATTACAAATCAGACGAGATTTACACCAGATTCCTCCTCCAGATCCGTCCAAAATGACTCAAATTACAAGTCCGTCCATTGATCCGGGACCTTCTAATATGTACTTGCCTCCATTTAGAAAGAGAAGTCACCCACCAGATATCGGAGATAATCCAAGGTCATGTGCTGCAGTTTACAGAAGCAGATCACCGGAGCCAACCAATCTCACAATGCCTCGGCCTCCAATAGGAAATGGGGAAATGGTAGTCGGTATAGCTCCTACACTTATGGGAATGCCGGCATATCATAAATTTGGATTACCGATGCCACCTCCTCACCCGCAAATCGCATACGGTCCAGTGCCTCACCCTGTTTTGGCACCACAACAAACTGTCGCTCAAGACTTGATTGTTAAGCATGCGCCGCCGAAGGACACAATACCTTCAACGTCCACTATAGTTACGAACTGCAAAGATGCAGGTACAAGCATGAAGGATGCAGAGGAATCAAGTTCGTCTTACATAGCGAGTGGCATTAAAAATATCATTGGTATTCAACCGCCGGCCAATCCAAGCCGGGGACAAGCGGATCCAGTGGACCGAAAAAAGGTTTCAGTATAG

Protein

MSENGGTAVSRSSTPHPVTEAQANAPLRSRHDQFLASTTERTQQRQSSSGRNPSVSFESPPLPYHRQIATGSLLTSSHRESSAFVPVVPTRSMHPVMYPSEMHPALIPSEIIERERMLDRERNEPAKGSPDRAPASFPKRSSFDLMAMMVEKRKEVALREAAAAMLLPHHRASSMDGMMSDGSPQPPIYGPPGAFLGAPGPSPTAAGNFTFPGAGLFPPNAGPHQIHPLDRRLLRAPGRASRPKKQFICKFCNRQFTKSYNLLIHERTHTDERPYSCDICGKAFRRQDHLRDHRYIHSKEKPFKCTECGKGFCQSRTLAVHKILHMEESPHKCPVCSRSFNQRSNLKTHLLTHTDHKPYECNSCGKVFRRNCDLRRHALTHAVGDVPPGDVLDVGEEDIGRPGSPIEPGYDDEDAEISSPEHSPVRRARSSSVESIGQEPQSEEKPRRQSPTPVERTHCHHNEQRDRASPYTMRPQHTDKHRAYSSDEYEKRRYTTEEIMEKEMRYTEIPEQQVRHPQLQIRRDLHQIPPPDPSKMTQITSPSIDPGPSNMYLPPFRKRSHPPDIGDNPRSCAAVYRSRSPEPTNLTMPRPPIGNGEMVVGIAPTLMGMPAYHKFGLPMPPPHPQIAYGPVPHPVLAPQQTVAQDLIVKHAPPKDTIPSTSTIVTNCKDAGTSMKDAEESSSSYIASGIKNIIGIQPPANPSRGQADPVDRKKVSV

Uniprot

A0A0U2SG80 A0A1E1WLY8 A0A212EYW5 A0A336KEW8 Q16X78 A0A3F2Z1Y5 + More
A0A1S4GYD7

Pubmed

22118469 17510324 12364791

EMBL

KT254331 ALR81971.1 GDQN01008080 GDQN01003188 JAT82974.1 JAT87866.1 + More
AGBW02011428 OWR46680.1 UFQS01000240 UFQT01000240 SSX01875.1 SSX22252.1 CH477545 EAT39241.2 AAAB01008964

Proteomes

UP000007151 UP000008820 UP000076407

Pfam

PF00096 zf-C2H2

Interpro

IPR013087 Znf_C2H2_type + More
IPR036236 Znf_C2H2_sf

SUPFAM

SSF57667 SSF57667

ProteinModelPortal

A0A0U2SG80 A0A1E1WLY8 A0A212EYW5 A0A336KEW8 Q16X78 A0A3F2Z1Y5 + More
A0A1S4GYD7

PDB

2EE8 E-value=1.04254e-38, Score=404

KEGG

101741488 K09215 odd-skipped | (RefSeq) protein bowel

GO

GO:0003676 GO:0046872 GO:0004497 GO:0005507 GO:0006000 GO:0004553 GO:0005634 GO:0006334 GO:0003779 GO:0016021

Length:

716

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00657

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00021

outside

1 - 716

Pi

256.256638

Theta

184.975907

Tajima's D

1.853077

CLR

0.213316

CSRT

0.853757312134393

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree