HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	6.7	1.3	0.18	11	2	23	278	300
2	12.6	0.2	0.0023	0.14	1	22	352	373
3	9.9	0.2	0.017	1	2	23	394	416
4	1.4	2.4	8.6	5.1e+02	2	20	428	446
5	13.1	0.3	0.0016	0.094	3	23	465	485
6	19.0	0.4	2.2e-05	0.0013	2	23	491	512
7	19.0	2.2	2.2e-05	0.0013	1	23	518	540
8	9.2	4.8	0.028	1.7	1	23	546	569

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.18
                    EETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirt.H 23 
                    +Cp+C+ +Fk+  +   H+r  H
  KWMTBOMO01121 278 ECPICKLRFKSEASVDLHRRHtH 300
                    5*****************99988 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 0.0023
                    EEETTTTEEESSHHHHHHHHHC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt 22 
                    y+C+ C+ +F +   L++H+ t
  KWMTBOMO01121 352 YRCDNCNVKFVSEGALRVHLLT 373
                    9******************976 PP

  == domain 3  score: 9.9 bits;  conditional E-value: 0.017
                    EETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirt.H 23 
                    +C++C k +  +s+L rH  t H
  KWMTBOMO01121 394 TCKICLKEYELPSELLRHVLTdH 416
                    7******************9999 PP

  == domain 4  score: 1.4 bits;  conditional E-value: 8.6
                    EETTTTEEESSHHHHHHHH CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHi 20 
                     C++C+k+ +++ +   H 
  KWMTBOMO01121 428 SCEHCNKMVSSRREHWWHT 446
                    6*****9999887766665 PP

  == domain 5  score: 13.1 bits;  conditional E-value: 0.0016
                    ETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   3 CpdCgksFkrksnLkrHirtH 23 
                    C++Cgk F +k  L+ H  +H
  KWMTBOMO01121 465 CDVCGKGFQNKTKLRIHELRH 485
                    *****************9999 PP

  == domain 6  score: 19.0 bits;  conditional E-value: 2.2e-05
                    EETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirtH 23 
                    +C++Cg+ F +k+ L rH  tH
  KWMTBOMO01121 491 RCDECGRAFYDKYALARHAHTH 512
                    7******************999 PP

  == domain 7  score: 19.0 bits;  conditional E-value: 2.2e-05
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ++C++Cg++F+ + nL+rH ++H
  KWMTBOMO01121 518 FVCTHCGQTFTLRTNLNRHAKVH 540
                    89*******************99 PP

  == domain 8  score: 9.2 bits;  conditional E-value: 0.028
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    y+Cp C k+Fk + + + Hirt H
  KWMTBOMO01121 546 YQCPMCCKKFKYSTSRNLHIRTvH 569
                    9*********************99 PP