Silkworm Genome Informatics Database

Found: 1 items

Gene	Transcription Factor Family	Full Seq Evalue	Best Domain Evalue	Domain Number	Alignment Detail
KWMTBOMO00902	CP2	6.1e-68	9e-68	1	+ View
HMM length of domain: 229 aa c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs. i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. Domain annotation for each sequence: # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to -- ----- ---- -------- -------- ------- ------ ------- ------ --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 227.9 0.2 1.6e-71 9e-68 28 227 244 435 Alignments for each domain: == domain 1 score: 227.9 bits; conditional E-value: 1.6e-71 CP2 28 sstekfrfevtLeaptamakkvneepltYLNkGQaYsislkdlgaaklselkgkklksvirvvFeeekqrkkeaklwklWkegrgseavrvvdi.. 121 s ++++rf+++L+a+t++a+k+nee+ltYLN+GQ+Y+i+lk+lg +ls++kgk lksvi++ F+e++++++e++++++W+++r+ e r+v++ KWMTBOMO00902 244 SFKDDTRFQYVLAAATSIATKQNEETLTYLNQGQSYEIKLKKLG--DLSHYKGKLLKSVIKICFHERRLQYMEREQIAQWHAERPGE--RIVEVdv 335 457899************************************..*************************************..5555555 PP CP2 122 pls.ggveeqkntqvelesssfdaveftWngeeeakifvrvNclStdFsksK..GvkGvPlrlqieTelisesvkesalevafckvKlFrdkGAeR 214 pls g+++ ++ ++++a+++ W+ ++e++++++vNc+St+F+ +K G+kGvP+r+q+eT+l s++++++ ++a c++K+F+ kGA+R KWMTBOMO00902 336 PLSyGIIKVEQS-------TALNALHVYWDATKEVGVYIKVNCISTEFTAKKhgGEKGVPFRIQVETYLASDENNRL--NAAACQIKVFKLKGADR 422 999988876.......89***********************************************999988..9************ PP CP2 215 Klkndvakvkkki 227 K+k+d++kv +++ KWMTBOMO00902 423 KHKQDREKVLRRP 435 *******9875 PP

Gene

Transcription Factor Family

Full Seq Evalue

Best Domain Evalue

Domain Number

Alignment Detail

KWMTBOMO00902

CP2

6.1e-68

9e-68

+ View

						  HMM length of domain: 229 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	227.9	0.2	1.6e-71	9e-68	28	227	244	435

  Alignments for each domain:
  == domain 1  score: 227.9 bits;  conditional E-value: 1.6e-71
            CP2  28 sstekfrfevtLeaptamakkvneepltYLNkGQaYsislkdlgaaklselkgkklksvirvvFeeekqrkkeaklwklWkegrgseavrvvdi.. 121
                    s ++++rf+++L+a+t++a+k+nee+ltYLN+GQ+Y+i+lk+lg  +ls++kgk lksvi++ F+e++++++e++++++W+++r+ e  r+v++  
  KWMTBOMO00902 244 SFKDDTRFQYVLAAATSIATKQNEETLTYLNQGQSYEIKLKKLG--DLSHYKGKLLKSVIKICFHERRLQYMEREQIAQWHAERPGE--RIVEVdv 335
                    457899**************************************..*****************************************..5555555 PP

            CP2 122 pls.ggveeqkntqvelesssfdaveftWngeeeakifvrvNclStdFsksK..GvkGvPlrlqieTelisesvkesalevafckvKlFrdkGAeR 214
                    pls g+++ ++        ++++a+++ W+ ++e++++++vNc+St+F+ +K  G+kGvP+r+q+eT+l s++++++  ++a c++K+F+ kGA+R
  KWMTBOMO00902 336 PLSyGIIKVEQS-------TALNALHVYWDATKEVGVYIKVNCISTEFTAKKhgGEKGVPFRIQVETYLASDENNRL--NAAACQIKVFKLKGADR 422
                    ***999988876.......89**************************************************999988..9**************** PP

            CP2 215 Klkndvakvkkki 227
                    K+k+d++kv +++
  KWMTBOMO00902 423 KHKQDREKVLRRP 435
                    *********9875 PP