Gene

KWMTBOMO00902

Pre Gene Modal

BGIBMGA009653

Annotation

PREDICTED:_transcription_factor_CP2-like_protein_1_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr2(-):6027968-6082254      View in EpiBrowser

Transcription factor

CP2

Location in the cell

Nuclear   Reliability : 4.091

CDS

ATGGAATATACGGAATATAGAGACTTTACAATGCATGACGTACGTAAAGAGGAGTACGGCTGGGAATCTACAGTTAGACTCATGGTCGGGAGGGAGGACGAATTGGGCATGTACCTGGAGGAGAGCAGGGAGGGCAGGAAGCGGAAGTGGCAGCCCGAGAAAATGAGGCGAGACGGCAGCGAAGATAAAGATCAGAAGAAGGTGCCTCCGAAGAAGATCATGGCTGCCCTAAGCGAGATAGGCGGGAGCGGCACAAGCTCCTCATCCTCGCATTTGTCTCCGGCATGGCAAGTCAACGAACTCGATCTGGACTTGCCCGTCGAACTATCAATGAACGAAGCGCTGTTGTCGCTTCCATCGTTGGCGGTGTTCAAACAGGAGGCTCCGTCCCCGACGGGCGCGGTGCTCTCGCCCCCCCGCCGCCACTGGCCCGTCCCCCGACGGAACGACGATCGGCAGATGACAAGCATGGTTGTCGACGGAGCCCGTGACGGCATGGACGAGTGCCAGCAGTCGCCTTCCCACAACGGAAACGCTATGCAGCATGGAAGTCCCGACGCCTTGCAGTGCCAACAGCAGATGCCGCCGAGCGCCGTCATGCCAATGAACGGTTACCATTCACCAAACGAACACGAGAATAAAAACGCTGGTCTGCTGATCTGCTCCCCGGTGGGCTCGCTGGAGGGCTACCTGCACTCTCCACCACACCTGCAGCCGCGCTCCGACTCCAGCTTCAAGGATGACACCAGGTTCCAGTACGTTCTGGCCGCAGCGACTTCGATAGCAACCAAACAGAACGAGGAAACCCTGACCTACCTCAACCAAGGCCAGTCCTACGAGATCAAGCTCAAGAAGCTCGGAGACTTGTCACATTACAAAGGAAAGCTGCTGAAAAGTGTCATCAAGATATGCTTCCACGAACGCCGCTTGCAGTACATGGAAAGGGAGCAGATAGCGCAGTGGCACGCCGAGAGACCGGGGGAGAGGATCGTAGAAGTGGACGTGCCTCTGTCGTACGGAATTATAAAAGTGGAACAATCCACAGCACTGAACGCGCTCCACGTCTACTGGGACGCCACCAAGGAAGTGGGTGTTTATATAAAGGTGAACTGCATCTCAACGGAATTCACAGCCAAGAAGCACGGCGGCGAGAAGGGAGTCCCATTCCGTATACAGGTCGAGACTTATCTCGCGAGCGACGAGAACAATCGTCTGAACGCCGCCGCCTGCCAGATCAAGGTATTCAAATTGAAAGGCGCCGATCGCAAACACAAACAGGACAGGGAGAAGGTGCTGCGCAGACCGAGGGCCGATCTGGACAAGTACCAGCCCGCCTGCGAGGCCACTGTGCTGACCACGTTGTCACACGACGCGCTGATGCCGCCGCCCTCGCTGGTCACCACCTCGCCGTCCTACTCGCCAGAGCTGTGTGTGACACCTAAATCTGCCTCGAGCCCTATCACTACCAAGCCGATTTCTCAACCAGCCATCGTTGGTACTACTAATCAAATGAAGCCGCTGTATTGTCAAGATGCTGGTGAGATGAAGGTGAGCAGCCCAACCTGCCACTCCCCAGGAGCTATCCTGCCTGATCTACCACAGCCTGCTGAGGAACCAGACAAGAACTTTGGATTATCAAAAGATGCCACCTCCGCCGAGACTCAGGTGTGGTTGTCCCGACAACGGTTCATGCAACACGCCGCCACGTTCGCGAACTTTTCCGGGGCTGATCTGCTGAGACTATCCCGTGATGACATTATCCAGATCGTCGGACTGGCTGATGGCATACGTCTGTTCAACGCACTTCACGCCAAACGCATCTCGCCGCGCCTCACCCTGTACGTGTGCCCGCCCTCCTCCGACGTGCACTGCGCGCTCTACCTGCACGCGTGTCGCGCGCACGAGCTGGTGCACAAGCTGAACGCGCTGCAGGGAGCCGGCAGCAAGGATTGCGAAACCGTATTGGTGTCCGGTCCGAACGGCGCTCGCGTCCGCCTCACCGACGAGCTGGTGCGACATCTGCCAGACAACTCGACTTATCGCCTCAAGAGACTCGAAGACTGCAATGCTCTGCTCCTAAGCGCCACCACCGGCAACTGA

Protein

MEYTEYRDFTMHDVRKEEYGWESTVRLMVGREDELGMYLEESREGRKRKWQPEKMRRDGSEDKDQKKVPPKKIMAALSEIGGSGTSSSSSHLSPAWQVNELDLDLPVELSMNEALLSLPSLAVFKQEAPSPTGAVLSPPRRHWPVPRRNDDRQMTSMVVDGARDGMDECQQSPSHNGNAMQHGSPDALQCQQQMPPSAVMPMNGYHSPNEHENKNAGLLICSPVGSLEGYLHSPPHLQPRSDSSFKDDTRFQYVLAAATSIATKQNEETLTYLNQGQSYEIKLKKLGDLSHYKGKLLKSVIKICFHERRLQYMEREQIAQWHAERPGERIVEVDVPLSYGIIKVEQSTALNALHVYWDATKEVGVYIKVNCISTEFTAKKHGGEKGVPFRIQVETYLASDENNRLNAAACQIKVFKLKGADRKHKQDREKVLRRPRADLDKYQPACEATVLTTLSHDALMPPPSLVTTSPSYSPELCVTPKSASSPITTKPISQPAIVGTTNQMKPLYCQDAGEMKVSSPTCHSPGAILPDLPQPAEEPDKNFGLSKDATSAETQVWLSRQRFMQHAATFANFSGADLLRLSRDDIIQIVGLADGIRLFNALHAKRISPRLTLYVCPPSSDVHCALYLHACRAHELVHKLNALQGAGSKDCETVLVSGPNGARVRLTDELVRHLPDNSTYRLKRLEDCNALLLSATTGN

Uniprot

A0A2J7Q2S2   A0A2J7Q2R8   A0A139WF83   A0A2J7Q2S9   A0A1Y1LDP9   A0A1Y1LA11   + More
V5G4Q8   A0A1L8DIC0   A0A1L8DIH0   A0A1L8DI50   A0A1L8DI60   A0A1B6DG69   A0A1B6GEK0   A0A023EVF9   A0A0J7L5F1   Q17K77   A0A1B0CIF9   A0A232FAA7   A0A158N974   A0A1S4G817   A0A0P5BDU5   A0A0V0G599   A0A224X9T8   L7ML72   A0A1J1IB54   A0A0A9Z1B5   A0A182JRP9   A0A0A9Z2U4   A0A182RMZ7   A0A293MTN9   A0A182WL00   B4J6U9   B4QI95  

Pubmed

18362917    19820115    28004739    24945155    17510324    28648823    + More
21347285    25576852    25401762    17994087   

EMBL

NEVH01019077    PNF22878.1    PNF22880.1    KQ971354    KYB26457.1    PNF22879.1    + More
GEZM01062471    GEZM01062470    JAV69706.1    GEZM01062469    JAV69708.1    GALX01003456    JAB65010.1    GFDF01007959    JAV06125.1    GFDF01007960    JAV06124.1    GFDF01007958    JAV06126.1    GFDF01007961    JAV06123.1    GEDC01014135    GEDC01012621    GEDC01010142    JAS23163.1    JAS24677.1    JAS27156.1    GECZ01013467    GECZ01008897    GECZ01006525    GECZ01005691    JAS56302.1    JAS60872.1    JAS63244.1    JAS64078.1    GAPW01000612    JAC12986.1    LBMM01000662    KMQ97851.1    CH477227    EAT47108.1    AJWK01013295    AJWK01013296    AJWK01013297    AJWK01013298    AJWK01013299    AJWK01013300    AJWK01013301    AJWK01013302    AJWK01013303    AJWK01013304    NNAY01000542    OXU27781.1    ADTU01008785    ADTU01008786    ADTU01008787    ADTU01008788    ADTU01008789    GDIP01191218    JAJ32184.1    GECL01002910    JAP03214.1    GFTR01007341    JAW09085.1    GACK01001110    JAA63924.1    CVRI01000042    CRK95673.1    GBHO01035091    GBHO01005953    GBHO01005947    GBRD01007938    GBRD01007937    JAG08513.1    JAG37651.1    JAG37657.1    JAG57883.1    GBHO01005951    GBHO01005949    GBHO01005948    GBRD01007941    GBRD01007940    JAG37653.1    JAG37655.1    JAG37656.1    JAG57880.1    GFWV01018613    MAA43341.1    CH916367    EDW02030.1    CM000362    EDX06455.1   

Proteomes

UP000235965    UP000007266    UP000036403    UP000008820    UP000092461    UP000215335    + More
UP000005205    UP000183832    UP000075881    UP000075900    UP000075920    UP000001070    UP000000304   

PRIDE

L7ML72   

Pfam

PF04516   CP2        + More
PF18016   SAM_3
PF00642   zf-CCCH
PF00383   dCMP_cyt_deam_1

Interpro

IPR041418   SAM_3        + More
IPR013761   SAM/pointed_sf       
IPR040167   TF_CP2-like       
IPR007604   CP2       
IPR016193   Cytidine_deaminase-like       
IPR001841   Znf_RING       
IPR036855   Znf_CCCH_sf       
IPR002125   CMP_dCMP_dom       
IPR000571   Znf_CCCH       
IPR013083   Znf_RING/FYVE/PHD       

SUPFAM

SSF47769   SSF47769        + More
SSF53927   SSF53927       
SSF90229   SSF90229       

Gene 3D

1.10.150.50     3.30.40.10    

ProteinModelPortal

A0A2J7Q2S2   A0A2J7Q2R8   A0A139WF83   A0A2J7Q2S9   A0A1Y1LDP9   A0A1Y1LA11   + More
V5G4Q8   A0A1L8DIC0   A0A1L8DIH0   A0A1L8DI50   A0A1L8DI60   A0A1B6DG69   A0A1B6GEK0   A0A023EVF9   A0A0J7L5F1   Q17K77   A0A1B0CIF9   A0A232FAA7   A0A158N974   A0A1S4G817   A0A0P5BDU5   A0A0V0G599   A0A224X9T8   L7ML72   A0A1J1IB54   A0A0A9Z1B5   A0A182JRP9   A0A0A9Z2U4   A0A182RMZ7   A0A293MTN9   A0A182WL00   B4J6U9   B4QI95  

PDB

5MR7     E-value=2.32279e-25,     Score=289

KEGG

101735982    K09275 transcription factor CP2 and related proteins | (RefSeq) transcription factor CP2-like protei

GO

GO:0003700   GO:0006357   GO:0005634   GO:0043565   GO:0003824   GO:0046872  

PANTHER

PTHR11037  

Length:

699

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00471

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00051

outside

1  -  699

 

 

Pi

241.362727

Theta

160.468581

Tajima's D

1.718896

CLR

0.01763

CSRT

0.827108644567772

Interpretation

Uncertain