HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	12.5	0.2	0.0025	0.15	2	23	216	237
2	19.3	4.5	1.7e-05	0.001	1	23	245	267
3	19.1	0.4	2e-05	0.0012	1	23	274	297
4	9.4	1.0	0.023	1.4	1	23	302	324
5	16.7	3.9	0.00011	0.0067	1	23	330	352
6	21.7	0.2	3e-06	0.00018	2	23	359	380
7	20.3	1.0	8.1e-06	0.00048	1	23	386	408
8	28.3	0.4	2.4e-08	1.5e-06	1	23	414	436
9	15.3	0.3	0.00033	0.02	1	23	442	464
10	15.6	3.4	0.00025	0.015	1	21	470	490
11	23.0	0.1	1.1e-06	6.8e-05	1	23	498	520

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.0025
                    EETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirtH 23 
                    +C +C+++F + s   +H+++H
  KWMTBOMO00721 216 ECQKCDQKFANVSAWSSHQQMH 237
                    6*******************99 PP

  == domain 2  score: 19.3 bits;  conditional E-value: 1.7e-05
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ++C++C+k+Fk + +L +H+++H
  KWMTBOMO00721 245 FQCNVCPKKFKKQTSLHTHLNRH 267
                    89********************9 PP

  == domain 3  score: 19.1 bits;  conditional E-value: 2e-05
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    y C++C++ Fk k  L++Hi + H
  KWMTBOMO00721 274 YICDVCKREFKYKGYLESHIISmH 297
                    89******************9988 PP

  == domain 4  score: 9.4 bits;  conditional E-value: 0.023
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ++C+ C +sF +k+ ++ H++ H
  KWMTBOMO00721 302 FTCEFCMQSFDSKDTFEIHRNAH 324
                    89******************988 PP

  == domain 5  score: 16.7 bits;  conditional E-value: 0.00011
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ++C +C+ksF   s L+ H+r+H
  KWMTBOMO00721 330 HQCLICHKSFYMASTLRDHLRVH 352
                    79********************9 PP

  == domain 6  score: 21.7 bits;  conditional E-value: 3e-06
                    EETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirtH 23 
                     C +Cgk F++k nL +H r+H
  KWMTBOMO00721 359 LCAICGKGFTQKNNLAQHVRRH 380
                    5********************9 PP

  == domain 7  score: 20.3 bits;  conditional E-value: 8.1e-06
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ++C+ C ksF +k +L++H r+H
  KWMTBOMO00721 386 HQCENCEKSFVSKGELEAHSRKH 408
                    79********************9 PP

  == domain 8  score: 28.3 bits;  conditional E-value: 2.4e-08
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ++C+dCg+ F+++s+L++H+r+H
  KWMTBOMO00721 414 FVCDDCGRGFTTSSSLVKHRRIH 436
                    89********************9 PP

  == domain 9  score: 15.3 bits;  conditional E-value: 0.00033
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y C+ C+ +F  +  Lk+H+r+H
  KWMTBOMO00721 442 YACDLCPLRFAVSGTLKNHRRRH 464
                    88********************9 PP

  == domain 10  score: 15.6 bits;  conditional E-value: 0.00025
                    EEETTTTEEESSHHHHHHHHH CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHir 21 
                    y C++C k F ++ +L +Hir
  KWMTBOMO00721 470 YHCSYCEKAFVQRNDLISHIR 490
                    89******************9 PP

  == domain 11  score: 23.0 bits;  conditional E-value: 1.1e-06
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y+C  Cg+sF+ +s L++H r+H
  KWMTBOMO00721 498 YVCAQCGQSFRKPSGLRAHARVH 520
                    99*******************99 PP